C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C-type lectin domain family 3, member b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026890 Clec3b-201 ENSMUSG00000025784 10090 + 9:123150946-123157430 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026890
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026890 148.364±54.79 23.517±6.43 276.258±41.64 2.354±1.16 170.329±61.78 56.683±12.22 27.577±2.87 10.142±2.40 0.264±0.18 79.188±9.95 22.505±4.08 39.089±10.10 2.353±4.23 4.789±2.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041W CIL_00041W_0003 CGP 9:123113215-123157430
CIL_0001W7 CIL_0001W7_0004 CGP 9:123150946-123216038

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001503 IEA ossification
GO:0001652 IEA granular component
GO:0005509 TAS calcium ion binding
GO:0005578 TAS proteinaceous extracellular matrix
GO:0005615 TAS extracellular space
GO:0005737 IEA cytoplasm
GO:0008201 IEA heparin binding
GO:0030246 TAS carbohydrate binding
GO:0030282 IEA bone mineralization
GO:0036143 IEA kringle domain binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071310 IEA cellular response to organic substance
GO:0071560 IEA cellular response to transforming growth factor beta stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296130 CLEC3B-001 protein_coding Homo_sapiens 0 608
ENST00000428034 CLEC3B-002 protein_coding Homo_sapiens 0 529
ENST00000490386 CLEC3B-003 processed_transcript Homo_sapiens 0 531

Loading