C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homer homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026922 Homer2-201 ENSMUSG00000025813 10090 - 7:81600481-81706925 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026922
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026922 0.577±0.35 0.283±0.07 0.826±0.18 1.942±0.41 0.897±0.34 4.986±2.47 4.137±0.35 0.175±0.04 2.343±1.88 0.638±0.10 1.787±1.05 1.283±0.70 1.876±0.54 0.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026B CIL_00026B_0002 CGP 7:81571292-81706925
CIL_00026F CIL_00026F_0002 CGP 7:81600481-81769491

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IMP cytoplasm
GO:0005886 IEA plasma membrane
GO:0007216 TAS G-protein coupled glutamate receptor signaling pathway
GO:0008277 IDA regulation of G-protein coupled receptor protein signaling pathway
GO:0019904 IEA protein domain specific binding
GO:0030054 IEA cell junction
GO:0030160 IDA GKAP/Homer scaffold activity
GO:0030425 IEA dendrite
GO:0035254 IEA glutamate receptor binding
GO:0035256 IEA G-protein coupled glutamate receptor binding
GO:0035584 IMP calcium-mediated signaling using intracellular calcium source
GO:0042803 IEA protein homodimerization activity
GO:0043025 IEA neuronal cell body
GO:0045177 IDA apical part of cell
GO:0045211 IEA postsynaptic membrane
GO:0046982 IEA protein heterodimerization activity
GO:0048148 IMP behavioral response to cocaine
GO:0048875 IMP chemical homeostasis within a tissue

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304231 HOMER2-004 protein_coding Homo_sapiens 0 1718
ENST00000450735 HOMER2-001 protein_coding Homo_sapiens 0 937
ENST00000558552 HOMER2-010 retained_intron Homo_sapiens 0 505
ENST00000558817 HOMER2-007 protein_coding Homo_sapiens 0 582
ENST00000560374 HOMER2-008 processed_transcript Homo_sapiens 0 460
ENST00000561345 HOMER2-006 processed_transcript Homo_sapiens 0 518
ENST00000619367 HOMER2-011 processed_transcript Homo_sapiens 0 241

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