C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: THO complex 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026990 Thoc3-001 ENSMUSG00000025872 10090 - 13:54458837-54468849 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026990
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026990 12.953±1.25 7.570±1.14 8.035±0.27 11.137±2.74 7.936±0.64 5.347±0.45 5.488±0.54 8.854±0.61 9.456±3.16 8.015±1.21 4.317±0.75 10.388±2.76 16.791±9.35 8.573±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZE CIL_0006ZE_0002 CGP 13:54371349-54468849

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000346 IEA transcription export complex
GO:0000445 ISS THO complex part of transcription export complex
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0006397 IEA mRNA processing
GO:0006406 IEA mRNA export from nucleus
GO:0008380 IEA RNA splicing
GO:0046784 IEA viral mRNA export from host cell nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000079016 thoc3-001 protein_coding Danio_rerio 0 728
ENST00000265097 THOC3-001 protein_coding Homo_sapiens 0 1327
ENST00000502601 RP11-423H2.1-004 retained_intron Homo_sapiens 0 490
ENST00000504756 RP11-423H2.1-005 retained_intron Homo_sapiens 0 309
ENST00000505969 THOC3-008 protein_coding Homo_sapiens 0 206
ENST00000506082 RP11-423H2.1-010 processed_transcript Homo_sapiens 0 466
ENST00000506672 RP11-423H2.1-002 processed_transcript Homo_sapiens 0 1314
ENST00000507037 RP11-423H2.1-009 processed_transcript Homo_sapiens 0 784
ENST00000510300 THOC3-005 processed_transcript Homo_sapiens 0 784
ENST00000510692 RP11-423H2.1-012 processed_transcript Homo_sapiens 0 658
ENST00000511062 THOC3-011 nonsense_mediated_decay Homo_sapiens 0 756
ENST00000511074 RP11-423H2.1-006 processed_transcript Homo_sapiens 0 420
ENST00000512851 RP11-423H2.1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1303
ENST00000513118 THOC3-006 retained_intron Homo_sapiens 0 490
ENST00000513482 THOC3-004 protein_coding Homo_sapiens 0 1118
ENST00000514250 THOC3-009 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000514861 THOC3-010 protein_coding Homo_sapiens 0 555
ENST00000515065 RP11-423H2.1-011 processed_transcript Homo_sapiens 0 555
ENST00000515525 RP11-423H2.1-003 processed_transcript Homo_sapiens 0 645
ENST00000613037 AC106795.5-201 protein_coding Homo_sapiens 0 1293
ENST00000622006 AC106795.3-201 protein_coding Homo_sapiens 0 1293

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