C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: THO complex 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000513482 THOC3-004 ENSG00000051596 9606 - 5:175960219-175968280 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000513482
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000513482 0.284±0.00 0.032±0.00 0.148±0.00 0.357±0.00 0.914±0.00 0.123±0.00 0.153±0.00 0.152±0.00 0.142±0.04 0.073±0.00 0.383±0.03 2.050±1.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZE CIL_0006ZE_0001 CGP 5:175796310-176034680

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000346 IDA transcription export complex
GO:0000445 IDA THO complex part of transcription export complex
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0006397 IEA mRNA processing
GO:0006406 IDA mRNA export from nucleus
GO:0008380 IEA RNA splicing
GO:0046784 IDA viral mRNA export from host cell nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026990 Thoc3-001 protein_coding Mus_musculus 0 1118
ENSMUST00000187104 RP24-240I9.2-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000135404 Thoc3-003 retained_intron Mus_musculus 0 538
ENSMUST00000151158 Thoc3-002 processed_transcript Mus_musculus 0 531

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