C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: shugoshin-like 2 (S. pombe)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027202 Sgol2-001 ENSMUSG00000026039 10090 + 1:57995971-58025899 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartLiverMuscleOvaryPlacentaTestisENSMUST00000027202
Transcript ID Adipose Bladder Brain Colon Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000027202 1.096±0.04 0.658±0.00 3.037±0.56 1.139±0.17 0.586±0.20 6.081±2.92 0.231±0.10 2.408±0.54 5.168±2.69 3.334±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002B2 CIL_0002B2_0002 CGP 1:57774162-58018956
CIL_0002AZ CIL_0002AZ_0002 CGP 1:57955101-58025899
CIL_0002B0 CIL_0002B0_0002 CGP 1:57995971-58106413

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IDA chromosome, centromeric region
GO:0000776 IDA kinetochore
GO:0000779 IDA condensed chromosome, centromeric region
GO:0000780 IDA condensed nuclear chromosome, centromeric region
GO:0005515 IPI protein binding
GO:0007140 IMP male meiosis
GO:0007143 IMP female meiotic division
GO:0008104 IMP protein localization
GO:0051754 IMP meiotic sister chromatid cohesion, centromeric
GO:2000711 IMP positive regulation of maintenance of meiotic sister chromatid cohesion, centromeric

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357799 SGOL2-001 protein_coding Homo_sapiens 0 627
ENST00000409203 SGOL2-002 protein_coding Homo_sapiens 0 464
ENST00000488636 SGOL2-005 retained_intron Homo_sapiens 0 289

Loading