C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhomboid domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027322 Rhbdd1-001 ENSMUSG00000026142 10090 + 1:82316452-82445366 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027322
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027322 6.427±0.67 13.492±0.82 8.377±0.16 1.270±0.55 7.865±1.18 8.768±0.51 4.689±0.62 6.761±0.53 6.428±1.28 10.415±0.62 2.450±0.40 6.982±1.62 4.369±1.81 8.858±5.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AH CIL_0004AH_0003 CGP 1:82316452-82586849

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004175 ISS endopeptidase activity
GO:0004252 ISS serine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006915 IEA apoptotic process
GO:0010954 IDA positive regulation of protein processing
GO:0030176 IDA integral component of endoplasmic reticulum membrane
GO:0030433 IDA ER-associated ubiquitin-dependent protein catabolic process
GO:0031293 IDA membrane protein intracellular domain proteolysis
GO:0033619 ISS membrane protein proteolysis
GO:0034620 IDA cellular response to unfolded protein
GO:0034644 IDA cellular response to UV
GO:0043066 IMP negative regulation of apoptotic process
GO:0043687 IDA post-translational protein modification
GO:0044322 IDA endoplasmic reticulum quality control compartment
GO:0045732 ISS positive regulation of protein catabolic process
GO:0048515 IMP spermatid differentiation
GO:0051047 ISS positive regulation of secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341329 RHBDD1-001 protein_coding Homo_sapiens 0 773
ENST00000392062 RHBDD1-201 protein_coding Homo_sapiens 0 773
ENST00000423616 RHBDD1-005 protein_coding Homo_sapiens 0 390
ENST00000424132 RHBDD1-004 protein_coding Homo_sapiens 0 320
ENST00000448992 RHBDD1-008 protein_coding Homo_sapiens 0 300

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