C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: desmin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027409 Des-001 ENSMUSG00000026208 10090 + 1:75360329-75368579 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027409
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027409 66.493±53.63 8.554±1.79 1001.454±112.19 0.407±0.02 68.231±64.02 354.221±53.70 294.399±57.55 10.091±3.05 1.224±0.31 66.514±17.49 611.001±268.91 76.829±22.27 24.240±14.20 2.464±1.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_0006NZ CIL_0006NZ_0002 CGP 1:75307896-75368579
CIL_0006O0 CIL_0006O0_0002 CGP 1:75360329-75432320

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005737 IDA cytoplasm
GO:0005856 IDA cytoskeleton
GO:0005882 IDA intermediate filament
GO:0005916 IDA fascia adherens
GO:0007517 TAS muscle organ development
GO:0008092 IEA cytoskeletal protein binding
GO:0030018 IDA Z disc
GO:0031594 IDA neuromuscular junction
GO:0042383 IDA sarcolemma
GO:0042802 IEA identical protein binding
GO:0043292 IDA contractile fiber
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000065356 desmb-001 protein_coding Danio_rerio 0 549
ENST00000373960 DES-001 protein_coding Homo_sapiens 0 2002
ENST00000477226 DES-006 retained_intron Homo_sapiens 0 989
ENST00000492726 DES-007 retained_intron Homo_sapiens 0 979

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