C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleolar protein interacting with the FHA domain of MKI67
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027626 Nifk-001 ENSMUSG00000026377 10090 + 1:118321839-118333822 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027626
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027626 7.059±2.39 3.123±1.28 9.427±1.35 5.591±2.32 4.617±1.09 3.446±1.08 3.886±0.61 4.980±0.71 12.314±8.43 4.348±0.74 5.549±1.06 6.183±3.21 16.108±7.89 2.778±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VI CIL_0001VI_0002 CGP 1:118321839-118612678

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000794 IEA condensed nuclear chromosome
GO:0003723 ISO RNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005730 ISO nucleolus
GO:0005737 ISO cytoplasm
GO:0010923 ISS negative regulation of phosphatase activity
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000285814 NIFK-001 protein_coding Homo_sapiens 0 243
ENST00000398317 NIFKP1-001 processed_pseudogene Homo_sapiens 5e-40 169
ENST00000447132 NIFK-005 protein_coding Homo_sapiens 0 241
ENST00000451734 NIFK-004 protein_coding Homo_sapiens 0 224
ENST00000477693 NIFK-003 retained_intron Homo_sapiens 0 243
ENST00000567275 NIFKP4-001 processed_pseudogene Homo_sapiens 1.4013e-45 187
ENST00000598115 NIFKP6-001 processed_pseudogene Homo_sapiens 0 200
ENST00000605689 RP11-697E2.9-001 processed_pseudogene Homo_sapiens 5e-40 169

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