C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027740 Lhx4-001 ENSMUSG00000026468 10090 - 1:155698031-155751710 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000027740
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000027740 0.005±0.00 0.011±0.00 0.000±0.00 0.007±0.00 0.007±0.00 0.010±0.00 0.006±0.00 0.003±0.00 0.001±0.00 0.009±0.01 0.005±0.01 0.022±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RD CIL_0006RD_0002 CGP 1:155558120-155751710
CIL_00065G CIL_00065G_0002 CGP 1:155698031-155812883

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001890 IGI placenta development
GO:0005622 IDA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008045 IGI motor neuron axon guidance
GO:0008270 IEA zinc ion binding
GO:0009887 IMP organ morphogenesis
GO:0021526 IGI medial motor column neuron differentiation
GO:0043066 IMP negative regulation of apoptotic process
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263726 LHX4-001 protein_coding Homo_sapiens 0 2076
ENST00000372588 ESX1-001 protein_coding Homo_sapiens 0.000002 58
ENST00000440959 LHX4-AS1-004 processed_transcript Homo_sapiens 0 305
ENST00000558139 LHX4-003 retained_intron Homo_sapiens 0 520
ENST00000561113 LHX4-002 nonsense_mediated_decay Homo_sapiens 0 767
ENST00000622400 LHX4-AS1-006 processed_transcript Homo_sapiens 4e-19 99

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