C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027743 Stx6-201 ENSMUSG00000026470 10090 + 1:155158703-155203517 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027743
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027743 21.484±5.14 31.250±2.48 15.842±4.07 41.197±9.41 22.651±8.09 17.087±1.01 5.648±1.10 15.159±1.82 4.944±1.23 30.564±1.17 3.528±0.32 31.912±6.79 19.453±9.96 6.884±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007W1 CIL_0007W1_0002 VISTA 1:154738612-155340657

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005484 IBA SNAP receptor activity
GO:0005515 IPI protein binding
GO:0005769 IEA early endosome
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0006886 IBA intracellular protein transport
GO:0006906 IBA vesicle fusion
GO:0007032 IMP endosome organization
GO:0016020 IDA membrane
GO:0016021 IBA integral component of membrane
GO:0031201 IBA SNARE complex
GO:0032588 IDA trans-Golgi network membrane
GO:0042147 IBA retrograde transport, endosome to Golgi
GO:0048193 IEA Golgi vesicle transport
GO:0048471 IEA perinuclear region of cytoplasm
GO:0055037 ISO recycling endosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258301 STX6-001 protein_coding Homo_sapiens 0 1051
ENST00000469135 STX6-002 processed_transcript Homo_sapiens 0 412
ENST00000496476 STX6-003 processed_transcript Homo_sapiens 2e-21 106
ENST00000542060 STX6-201 protein_coding Homo_sapiens 0 588

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