C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: activating transcription factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027941 Atf3-001 ENSMUSG00000026628 10090 - 1:191170296-191183340 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027941
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027941 2.980±0.43 1.579±0.70 3.235±1.34 0.341±0.16 4.146±0.64 14.677±3.67 2.102±0.26 0.722±0.12 0.671±0.35 4.261±1.64 1.341±0.49 3.829±1.18 17.447±12.48 0.078±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JQ CIL_0008JQ_0002 VISTA 1:190939014-191541717

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IDA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0006094 IDA gluconeogenesis
GO:0006351 IEA transcription, DNA-templated
GO:0008284 IEA positive regulation of cell proliferation
GO:0035914 IMP skeletal muscle cell differentiation
GO:0042802 IEA identical protein binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341491 ATF3-001 protein_coding Homo_sapiens 0 928
ENST00000366983 ATF3-004 protein_coding Homo_sapiens 0 261
ENST00000366985 ATF3-007 protein_coding Homo_sapiens 0 532
ENST00000366987 ATF3-201 protein_coding Homo_sapiens 0 821
ENST00000464547 ATF3-003 nonsense_mediated_decay Homo_sapiens 0 261
ENST00000492118 ATF3-008 processed_transcript Homo_sapiens 0 392
ENST00000613104 ATF3-009 protein_coding Homo_sapiens 0 575
ENST00000613954 ATF3-202 protein_coding Homo_sapiens 0 752

Loading