C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: activating transcription factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000464547 ATF3-003 ENSG00000162772 9606 + 1:212615022-212619555 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000464547
Transcript ID Brain
ENST00000464547 0.707±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JQ CIL_0008JQ_0001 VISTA 1:212231404-212833951

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IC RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0042802 IPI identical protein binding
GO:0043565 IEA sequence-specific DNA binding
GO:0044267 TAS cellular protein metabolic process
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131854 Atf3-002 processed_transcript Mus_musculus 0 261
ENSMUST00000027941 Atf3-001 protein_coding Mus_musculus 0 261

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