C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: optineurin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027986 Optn-002 ENSMUSG00000026672 10090 - 2:5020644-5063938 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartLiverMuscleOvaryPlacentaTestisENSMUST00000027986
Transcript ID Adipose Brain Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000027986 0.516±0.00 4.918±0.00 1.810±0.00 0.934±0.00 3.805±0.00 2.684±0.75 12.031±9.02 56.920±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000968 CIL_000968_0002 VISTA 2:4582644-5183763

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0005802 ISS trans-Golgi network
GO:0006914 IEA autophagy
GO:0031410 IEA cytoplasmic vesicle
GO:0034613 IMP cellular protein localization
GO:0043124 IMP negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070530 IDA K63-linked polyubiquitin binding
GO:0090161 ISS Golgi ribbon formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263036 OPTN-006 protein_coding Homo_sapiens 0 972
ENST00000378747 OPTN-008 protein_coding Homo_sapiens 0 972
ENST00000378748 OPTN-005 protein_coding Homo_sapiens 0 972
ENST00000378752 OPTN-004 protein_coding Homo_sapiens 0 1016
ENST00000378757 OPTN-007 protein_coding Homo_sapiens 0 972
ENST00000378764 OPTN-009 protein_coding Homo_sapiens 0 1016

Loading