C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028000 Nuf2-201 ENSMUSG00000026683 10090 - 1:169498312-169531428 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028000
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028000 0.674±0.64 0.256±0.03 0.537±0.04 3.506±2.35 0.321±0.10 1.116±0.32 0.150±0.00 0.175±0.07 14.353±9.03 0.168±0.04 0.064±0.07 2.241±2.56 10.874±10.31 10.895±2.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BK CIL_0009BK_0002 VISTA 1:169043699-169645191
CIL_0008AF CIL_0008AF_0002 VISTA 1:169085394-169686297
CIL_0009CL CIL_0009CL_0002 VISTA 1:169176672-169778007

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0007067 IEA mitotic nuclear division
GO:0031262 ISS Ndc80 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000271452 NUF2-001 protein_coding Homo_sapiens 0 1035
ENST00000367900 NUF2-002 protein_coding Homo_sapiens 0 1035
ENST00000442820 NUF2-004 protein_coding Homo_sapiens 0 462
ENST00000450453 NUF2-003 protein_coding Homo_sapiens 0 387
ENST00000490881 NUF2-006 processed_transcript Homo_sapiens 4.2039e-45 185
ENST00000497990 NUF2-005 nonsense_mediated_decay Homo_sapiens 0 614
ENST00000524800 NUF2-008 protein_coding Homo_sapiens 0 612

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