C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycerol phosphate dehydrogenase 2, mitochondrial
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028167 Gpd2-201 ENSMUSG00000026827 10090 + 2:57238382-57370719 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000028167
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000028167 16.072±3.84 11.002±2.52 3.507±0.48 1.333±0.89 24.627±8.24 6.988±0.67 3.467±0.24 8.841±1.56 3.154±1.64 7.123±1.47 13.828±8.18 2.282±1.40 6.567±1.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NB CIL_0007NB_0002 UCNEbase 2:56227555-57879432
CIL_000759 CIL_000759_0002 CGP 2:57106830-57370719
CIL_0008JK CIL_0008JK_0002 VISTA 2:57217307-57818247
CIL_000756 CIL_000756_0002 CGP 2:57237635-58045860

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0006072 IMP glycerol-3-phosphate metabolic process
GO:0006094 IMP gluconeogenesis
GO:0009331 TAS glycerol-3-phosphate dehydrogenase complex
GO:0019563 IEA glycerol catabolic process
GO:0035264 IGI multicellular organism growth
GO:0043010 IGI camera-type eye development
GO:0052591 IEA sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310454 GPD2-001 protein_coding Homo_sapiens 0 2436
ENST00000409125 GPD2-201 protein_coding Homo_sapiens 0 2156
ENST00000409674 GPD2-003 protein_coding Homo_sapiens 0 2433
ENST00000409861 GPD2-012 nonsense_mediated_decay Homo_sapiens 0 2375
ENST00000438166 GPD2-002 protein_coding Homo_sapiens 0 2484
ENST00000464846 GPD2-011 retained_intron Homo_sapiens 0 368
ENST00000492005 GPD2-009 processed_transcript Homo_sapiens 0 387
ENST00000496190 GPD2-010 processed_transcript Homo_sapiens 0 291
ENST00000540309 GPD2-202 protein_coding Homo_sapiens 0 1310
ENST00000587908 AC006116.22-001 processed_pseudogene Homo_sapiens 0 1812

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