C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000759_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000153234-ENSG00000115159 CGP 9606 2:156324432-156613735
GeneTranscriptPositionBiotype
ENSG00000115159 (GPD2)
glycerol-3-phosphate dehydrogenase 2 (mitochondrial) 		ENST00000310454 (GPD2-001) 156435441-156586403 protein_coding
ENST00000409125 (GPD2-201) 156473572-156583228 protein_coding
ENST00000409674 (GPD2-003) 156473572-156583058 protein_coding
ENST00000409861 (GPD2-012) 156473572-156613735 nonsense_mediated_decay
ENST00000415049 (GPD2-008) 156435290-156510849 protein_coding
ENST00000416888 (GPD2-005) 156473572-156501844 nonsense_mediated_decay
ENST00000430992 (GPD2-006) 156473592-156510834 nonsense_mediated_decay
ENST00000438166 (GPD2-002) 156436389-156583058 protein_coding
ENST00000464846 (GPD2-011) 156571172-156583009 retained_intron
ENST00000492005 (GPD2-009) 156579083-156583048 processed_transcript
ENST00000495851 (GPD2-007) 156436427-156501881 processed_transcript
ENST00000496190 (GPD2-010) 156579686-156583273 processed_transcript
ENST00000540309 (GPD2-202) 156436485-156583404 protein_coding
ENSG00000153234 (NR4A2)
nuclear receptor subfamily 4, group A, member 2 		ENST00000339562 (NR4A2-001) 156324432-156332716 protein_coding
ENST00000406048 (NR4A2-007) 156327904-156330121 protein_coding
ENST00000409108 (NR4A2-009) 156325744-156330707 protein_coding
ENST00000409572 (NR4A2-010) 156325098-156342348 protein_coding
ENST00000417764 (NR4A2-011) 156325100-156330788 nonsense_mediated_decay
ENST00000417972 (NR4A2-006) 156325100-156331965 nonsense_mediated_decay
ENST00000421709 (NR4A2-004) 156329678-156332720 protein_coding
ENST00000424077 (NR4A2-005) 156329413-156332713 protein_coding
ENST00000426264 (NR4A2-003) 156325082-156332714 protein_coding
ENST00000429376 (NR4A2-008) 156325744-156330721 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_000759_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026826-ENSMUSG00000026827 CGP 10090 2:57106830-57370719
GeneTranscriptPositionBiotype
ENSMUSG00000026826 (Nr4a2)
nuclear receptor subfamily 4, group A, member 2 		ENSMUST00000028166 (Nr4a2-003) 57106830-57115038 protein_coding
ENSMUST00000112627 (Nr4a2-006) 57107499-57113072 protein_coding
ENSMUST00000112629 (Nr4a2-001) 57106830-57124003 protein_coding
ENSMUST00000128776 (Nr4a2-004) 57112990-57114373 processed_transcript
ENSMUST00000140165 (Nr4a2-005) 57112003-57115038 processed_transcript
ENSMUST00000183542 (Nr4a2-002) 57106830-57124003 nonsense_mediated_decay
ENSMUSG00000026827 (Gpd2)
glycerol phosphate dehydrogenase 2, mitochondrial 		ENSMUST00000028167 (Gpd2-201) 57238382-57370719 protein_coding
ENSMUST00000112618 (Gpd2-001) 57238297-57370719 protein_coding
ENSMUST00000124689 (Gpd2-004) 57265135-57268108 processed_transcript
ENSMUST00000141536 (Gpd2-002) 57237635-57367853 processed_transcript
ENSMUST00000148991 (Gpd2-003) 57244362-57306976 processed_transcript
ENSMUST00000154612 (Gpd2-005) 57267377-57268108 processed_transcript
ENSMUST00000169687 (Gpd2-202) 57237678-57370719 protein_coding
ENSMUSG00000084292 (Gm13535)
predicted gene 13535 		ENSMUST00000118714 (Gm13535-001) 57272564-57275686 processed_pseudogene
ENSMUSG00000084938 (BB557941)
expressed sequence BB557941 		ENSMUST00000126549 (BB557941-001) 57127479-57181754 processed_transcript
ENSMUSG00000086396 (4930555B11Rik)
RIKEN cDNA 4930555B11 gene 		ENSMUST00000123210 (4930555B11Rik-001) 57181831-57188257 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000759_0001ENSG00000115159ENST00000310454ENST00000409125ENST00000409674ENST00000409861ENST00000415049ENST00000416888ENST00000430992ENST00000438166ENST00000464846ENST00000492005ENST00000495851ENST00000496190ENST00000540309ENSG00000153234ENST00000339562ENST00000406048ENST00000409108ENST00000409572ENST00000417764ENST00000417972ENST00000421709ENST00000424077ENST00000426264ENST00000429376CIL_000759_0002ENSMUSG00000026826ENSMUST00000028166ENSMUST00000112627ENSMUST00000112629ENSMUST00000128776ENSMUST00000140165ENSMUST00000183542ENSMUSG00000026827ENSMUST00000028167ENSMUST00000112618ENSMUST00000124689ENSMUST00000141536ENSMUST00000148991ENSMUST00000154612ENSMUST00000169687ENSMUSG00000084292ENSMUST00000118714ENSMUSG00000084938ENSMUST00000126549ENSMUSG00000086396ENSMUST00000123210
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000759_0001ENSG00000115159ENST00000310454ENST00000409674ENST00000438166ENST00000464846ENST00000496190ENSG00000153234ENST00000339562ENST00000409108ENST00000409572ENST00000417764ENST00000421709ENST00000424077ENST00000426264ENST00000429376CIL_000759_0002ENSMUSG00000026826ENSMUST00000028166ENSMUST00000112627ENSMUST00000112629ENSMUST00000140165ENSMUST00000183542ENSMUSG00000026827ENSMUST00000028167ENSMUST00000112618ENSMUST00000141536ENSMUST00000169687ENSMUSG00000084292ENSMUST00000118714ENSMUSG00000084938ENSMUST00000126549ENSMUSG00000086396ENSMUST00000123210
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115159 ENST00000310454 N/A N/A 0.693±0.00 1.629±0.14 1.354±0.00 N/A 1.588±0.00 1.991±1.65 N/A N/A 6.649±0.00 5.603±1.01 0.407±0.07 N/A
ENST00000409125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409674 N/A N/A N/A N/A 1.729±0.00 N/A N/A 0.355±0.00 N/A N/A 1.731±0.00 N/A N/A 3.031±0.00
ENST00000409861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438166 N/A N/A N/A N/A 2.358±0.00 2.573±0.00 N/A N/A 1.929±0.00 N/A N/A N/A 1.089±0.00 N/A
ENST00000464846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.076±0.00 5.817±0.00
ENST00000492005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496190 N/A N/A N/A N/A N/A N/A N/A 1.167±0.00 N/A N/A N/A N/A N/A N/A
ENST00000540309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000153234 ENST00000339562 3.887±0.00 0.300±0.00 N/A 0.676±0.00 4.296±0.00 1.309±0.00 2.319±0.00 N/A N/A 10.466±0.00 N/A 38.420±26.52 0.446±0.00 0.833±0.00
ENST00000406048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409108 3.146±0.00 N/A N/A N/A N/A N/A 0.171±0.00 N/A N/A N/A N/A N/A 0.253±0.00 1.020±0.00
ENST00000409572 N/A N/A 1.737±0.00 1.089±0.00 0.616±0.00 0.347±0.00 0.108±0.00 N/A N/A 3.050±2.35 1.320±0.85 N/A 0.096±0.00 1.756±0.00
ENST00000417764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.365±0.00 N/A
ENST00000417972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421709 N/A N/A N/A N/A N/A N/A N/A 0.107±0.00 N/A N/A N/A N/A N/A N/A
ENST00000424077 N/A N/A N/A N/A N/A N/A N/A N/A 1.754±0.00 N/A N/A N/A N/A N/A
ENST00000426264 3.096±0.00 N/A N/A N/A N/A N/A 0.835±0.00 0.022±0.00 1.672±0.00 N/A 0.615±0.00 N/A N/A 1.834±0.00
ENST00000429376 N/A N/A N/A N/A N/A 0.458±0.00 N/A N/A N/A N/A 0.850±0.00 N/A 0.170±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026826 ENSMUST00000028166 0.574±0.11 2.010±0.54 0.297±0.01 2.547±0.57 0.197±0.11 0.570±0.19 N/A 0.125±0.03 0.083±0.00 0.565±0.23 N/A 0.338±0.13 0.151±0.07 N/A
ENSMUST00000112627 0.169±0.00 1.006±0.27 N/A N/A 0.213±0.07 0.822±0.25 0.103±0.00 0.177±0.02 0.019±0.01 N/A 0.104±0.04 0.261±0.00 0.106±0.02 0.073±0.00
ENSMUST00000112629 0.479±0.24 1.122±0.34 0.313±0.06 1.102±0.00 0.317±0.18 0.484±0.15 0.238±0.10 0.106±0.03 0.155±0.06 0.352±0.10 0.144±0.05 0.615±0.16 0.121±0.04 0.245±0.03
ENSMUST00000128776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140165 0.420±0.00 N/A N/A N/A 0.568±0.00 N/A 0.190±0.12 0.224±0.13 0.099±0.03 N/A 0.167±0.02 N/A N/A 0.038±0.00
ENSMUST00000183542 N/A 1.000±0.35 N/A N/A 0.472±0.00 0.529±0.00 N/A N/A N/A 0.238±0.00 0.122±0.00 0.541±0.21 N/A N/A
ENSMUSG00000026827 ENSMUST00000028167 16.072±3.84 11.002±2.52 3.507±0.48 1.333±0.89 24.627±8.24 6.988±0.67 3.467±0.24 8.841±1.56 3.154±1.64 7.123±1.47 13.828±8.18 2.282±1.40 6.567±1.86 N/A
ENSMUST00000112618 N/A 2.742±0.94 N/A N/A N/A N/A N/A N/A N/A 1.088±0.00 N/A 0.978±0.53 N/A N/A
ENSMUST00000124689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.807±9.95
ENSMUST00000148991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169687 1.642±0.00 3.835±0.19 0.655±0.00 3.763±2.85 N/A N/A N/A N/A 0.295±0.06 N/A N/A 1.910±0.95 1.263±0.71 N/A
ENSMUSG00000084292 ENSMUST00000118714 0.042±0.01 N/A 0.015±0.00 N/A 0.124±0.08 0.119±0.03 0.019±0.00 0.053±0.02 0.033±0.02 0.094±0.00 0.017±0.00 0.120±0.11 N/A 0.181±0.13
ENSMUSG00000084938 ENSMUST00000126549 0.042±0.00 N/A 0.030±0.00 0.099±0.02 N/A 0.639±0.00 N/A 0.112±0.05 0.032±0.02 N/A 0.026±0.01 0.343±0.21 0.058±0.03 1.556±0.18
ENSMUSG00000086396 ENSMUST00000123210 N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A 0.004±0.00 N/A N/A N/A 0.012±0.00 0.428±0.02

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