C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin gamma 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028187 Lamc3-001 ENSMUSG00000026840 10090 + 2:31887344-31946539 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028187
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028187 4.041±3.05 7.043±1.48 1.146±0.00 1.661±1.26 4.465±2.14 0.407±0.14 0.142±0.06 3.328±1.65 0.065±0.09 2.745±1.16 0.230±0.08 8.829±5.19 0.443±0.51 2.091±1.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XQ CIL_0008XQ_0002 VISTA 2:31340644-31941311
CIL_0006II CIL_0006II_0002 CGP 2:31813290-31946539
CIL_00088E CIL_00088E_0002 VISTA 2:31827730-32428586
CIL_0002EI CIL_0002EI_0003 CGP 2:31887291-31973442

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000904 IGI cell morphogenesis involved in differentiation
GO:0005576 TAS extracellular region
GO:0005604 IDA basement membrane
GO:0007155 IEA cell adhesion
GO:0007601 IGI visual perception
GO:0014002 IGI astrocyte development
GO:0060041 IGI retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361069 LAMC3-004 protein_coding Homo_sapiens 0 2931
ENST00000480883 LAMC3-001 processed_transcript Homo_sapiens 0 1387

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