C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, gamma 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361069 LAMC3-004 ENSG00000050555 9606 + 9:131009082-131093059 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361069
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361069 0.392±0.00 0.518±0.00 1.329±0.00 0.642±0.36 0.141±0.12 0.390±0.00 0.155±0.00 3.545±3.41 1.080±0.37 6.308±5.53 0.015±0.00 1.680±1.22 46.179±18.02 29.434±16.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006II CIL_0006II_0001 CGP 9:130902438-131094473
CIL_0002EI CIL_0002EI_0002 CGP 9:131009082-131123152

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000904 IEA cell morphogenesis involved in differentiation
GO:0005198 TAS structural molecule activity
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 TAS proteinaceous extracellular matrix
GO:0005604 IEA basement membrane
GO:0007155 IEA cell adhesion
GO:0007601 IEA visual perception
GO:0014002 IEA astrocyte development
GO:0016020 TAS membrane
GO:0030198 TAS extracellular matrix organization
GO:0060041 IEA retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028187 Lamc3-001 protein_coding Mus_musculus 0 2931
ENSMUST00000138325 Lamc3-002 protein_coding Mus_musculus 0 2758

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