C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 3, subunit M
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028592 Eif3m-001 ENSMUSG00000027170 10090 - 2:104999656-105017080 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028592
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028592 24.843±9.26 8.001±2.22 65.936±5.54 51.012±12.96 19.335±5.29 14.801±3.17 22.978±2.39 23.971±0.78 41.788±32.67 17.963±1.08 44.379±3.17 44.277±50.02 87.287±48.85 23.447±9.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SB CIL_0008SB_0002 VISTA 2:104593780-105194712

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001731 IEA formation of translation preinitiation complex
GO:0002183 IBA cytoplasmic translational initiation
GO:0003743 IEA translation initiation factor activity
GO:0005852 IBA eukaryotic translation initiation factor 3 complex
GO:0006412 IMP translation
GO:0006446 IEA regulation of translational initiation
GO:0016282 IEA eukaryotic 43S preinitiation complex
GO:0031369 IDA translation initiation factor binding
GO:0033290 IEA eukaryotic 48S preinitiation complex
GO:0071541 IDA eukaryotic translation initiation factor 3 complex, eIF3m

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323213 EIF3M-007 protein_coding Homo_sapiens 0 987
ENST00000335185 CCDC73-001 protein_coding Homo_sapiens 0 215
ENST00000415528 RP5-849L7.1-001 processed_pseudogene Homo_sapiens 0 261
ENST00000524711 EIF3M-005 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000524896 EIF3M-002 protein_coding Homo_sapiens 0 985
ENST00000525054 EIF3M-012 retained_intron Homo_sapiens 0 713
ENST00000525782 EIF3M-004 nonsense_mediated_decay Homo_sapiens 0 436
ENST00000526267 EIF3M-013 protein_coding Homo_sapiens 0 721
ENST00000530026 EIF3M-010 retained_intron Homo_sapiens 0 857
ENST00000531120 EIF3M-001 protein_coding Homo_sapiens 0 1615
ENST00000531186 EIF3M-008 retained_intron Homo_sapiens 0 473
ENST00000531921 EIF3M-003 nonsense_mediated_decay Homo_sapiens 0 475
ENST00000532054 EIF3M-006 processed_transcript Homo_sapiens 0 327
ENST00000532444 EIF3M-009 nonsense_mediated_decay Homo_sapiens 0 749
ENST00000533439 EIF3M-011 protein_coding Homo_sapiens 0 630

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