C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage stimulation factor, 3' pre-RNA, subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028599 Cstf3-001 ENSMUSG00000027176 10090 + 2:104590523-104665429 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028599
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028599 2.349±1.04 1.001±0.27 4.959±0.69 10.067±2.47 1.375±0.36 1.667±0.72 1.202±0.20 1.848±0.48 5.288±4.78 2.199±0.45 1.258±0.33 4.586±3.22 11.062±2.13 5.769±1.90

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006397 IEA mRNA processing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323959 CSTF3-001 protein_coding Homo_sapiens 0 3705
ENST00000431742 CSTF3-003 protein_coding Homo_sapiens 0 270
ENST00000438862 CSTF3-002 protein_coding Homo_sapiens 0 444
ENST00000524556 CSTF3-008 nonsense_mediated_decay Homo_sapiens 0 346
ENST00000524775 CSTF3-004 protein_coding Homo_sapiens 0 331
ENST00000524827 CSTF3-007 protein_coding Homo_sapiens 0 726
ENST00000526480 CSTF3-006 processed_transcript Homo_sapiens 0 444
ENST00000527661 TCP11L1-004 nonsense_mediated_decay Homo_sapiens 0 278
ENST00000528865 CSTF3-005 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000528962 TCP11L1-005 protein_coding Homo_sapiens 7.00649e-43 178

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