C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine amidinotransferase (L-arginine:glycine amidinotransferase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028624 Gatm-001 ENSMUSG00000027199 10090 - 2:122594467-122611303 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028624
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028624 10.316±8.17 2.726±1.36 7.601±0.49 6.814±1.52 8.301±1.07 8.540±2.39 1.864±0.50 547.063±110.15 8.746±4.56 4.912±0.65 2.081±0.45 15.051±3.97 12.320±4.31 39.334±19.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ND CIL_0004ND_0002 CGP 2:122484941-122611303

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0005758 IEA mitochondrial intermembrane space
GO:0006601 IEA creatine biosynthetic process
GO:0006979 IEA response to oxidative stress
GO:0007584 IEA response to nutrient
GO:0010033 IEA response to organic substance
GO:0015067 IEA amidinotransferase activity
GO:0015068 IEA glycine amidinotransferase activity
GO:0016813 IEA hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO:0042246 IEA tissue regeneration
GO:0043434 IEA response to peptide hormone
GO:0046689 IEA response to mercury ion
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000396659 GATM-001 protein_coding Homo_sapiens 0 2034
ENST00000558118 GATM-005 nonsense_mediated_decay Homo_sapiens 0 398
ENST00000558163 GATM-004 protein_coding Homo_sapiens 0 549
ENST00000558336 GATM-002 protein_coding Homo_sapiens 0 1570
ENST00000558362 GATM-003 retained_intron Homo_sapiens 0 1932
ENST00000558537 GATM-006 protein_coding Homo_sapiens 0 529
ENST00000558916 GATM-010 retained_intron Homo_sapiens 0 966
ENST00000559885 GATM-007 protein_coding Homo_sapiens 0 457
ENST00000560538 GATM-009 processed_transcript Homo_sapiens 0 289
ENST00000561148 GATM-008 protein_coding Homo_sapiens 0 525
ENST00000561376 GATM-011 retained_intron Homo_sapiens 6e-23 111

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