C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 4933406J08 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028661 4933406J08Rik-001 ENSMUSG00000027229 10090 + 2:122186272-122206397 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverOvaryPlacentaTestisENSMUST00000028661
Transcript ID Colon Liver Ovary Placenta Testis
ENSMUST00000028661 0.087±0.00 0.008±0.00 0.015±0.00 0.091±0.07 1.068±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DM CIL_0004DM_0002 CGP 2:122160700-122206397
CIL_0004DN CIL_0004DN_0002 CGP 2:122186272-122265340

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340827 C15orf43-001 protein_coding Homo_sapiens 0 592
ENST00000557864 C15orf43-003 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000558917 CTD-2014N11.1-001 unprocessed_pseudogene Homo_sapiens 1.99993e-41 172
ENST00000559137 C15orf43-002 nonsense_mediated_decay Homo_sapiens 0 527

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