C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: isovaleryl coenzyme A dehydrogenase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028807 Ivd-001 ENSMUSG00000027332 10090 + 2:118861954-118882909 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028807
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028807 49.508±13.86 178.090±9.60 15.506±1.69 8.627±2.80 56.365±17.71 23.546±2.25 97.644±9.20 96.212±5.66 50.712±33.57 26.537±2.18 33.240±2.13 30.592±11.91 7.343±3.38 8.126±3.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070I CIL_00070I_0002 CGP 2:118814003-118882909
CIL_00070J CIL_00070J_0002 CGP 2:118861954-118924528

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0005759 IEA mitochondrial matrix
GO:0006552 IEA leucine catabolic process
GO:0008470 IEA isovaleryl-CoA dehydrogenase activity
GO:0031966 IEA mitochondrial membrane
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000466756 IVD-008 protein_coding Homo_sapiens 2e-21 106
ENST00000473112 IVD-006 protein_coding Homo_sapiens 0 887
ENST00000479013 IVD-002 protein_coding Homo_sapiens 0 1312
ENST00000481262 IVD-010 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000484250 IVD-005 retained_intron Homo_sapiens 0 514
ENST00000487418 IVD-001 protein_coding Homo_sapiens 0 1502
ENST00000491554 IVD-009 protein_coding Homo_sapiens 0 632
ENST00000497252 IVD-007 processed_transcript Homo_sapiens 0 592
ENST00000497816 IVD-003 retained_intron Homo_sapiens 0 540
ENST00000558610 IVD-013 protein_coding Homo_sapiens 0 656
ENST00000559575 IVD-012 protein_coding Homo_sapiens 4e-22 108

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