C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger CCCH type containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028866 Zc3h8-001 ENSMUSG00000027387 10090 - 2:128926268-128944077 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028866
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028866 0.867±0.51 0.766±0.25 1.526±0.15 2.606±1.39 0.878±0.26 0.972±0.19 0.739±0.27 1.159±0.55 0.881±0.39 0.888±0.31 3.382±0.36 2.090±1.34 2.696±3.20 2.122±1.66

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047V CIL_00047V_0002 CGP 2:128862981-128944077

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006915 IEA apoptotic process
GO:0008023 ISS transcription elongation factor complex
GO:0015030 ISS Cajal body
GO:0033085 ISS negative regulation of T cell differentiation in thymus
GO:0035327 ISS transcriptionally active chromatin
GO:0035363 ISS histone locus body
GO:0042795 ISS snRNA transcription from RNA polymerase II promoter
GO:0042796 ISS snRNA transcription from RNA polymerase III promoter
GO:0043029 ISS T cell homeostasis
GO:0043565 IDA sequence-specific DNA binding
GO:0044822 IEA poly(A) RNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045945 ISS positive regulation of transcription from RNA polymerase III promoter
GO:0046677 ISS response to antibiotic
GO:0046872 IEA metal ion binding
GO:0070245 ISS positive regulation of thymocyte apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272570 ZC3H8-201 protein_coding Homo_sapiens 0 758
ENST00000343936 ZC3H6-201 protein_coding Homo_sapiens 0 226
ENST00000409573 ZC3H8-001 protein_coding Homo_sapiens 0 758
ENST00000409871 ZC3H6-001 protein_coding Homo_sapiens 0 226
ENST00000464305 ZC3H8-003 processed_transcript Homo_sapiens 0 276
ENST00000466259 ZC3H8-006 retained_intron Homo_sapiens 0 433
ENST00000474234 ZC3H8-002 processed_transcript Homo_sapiens 0 444
ENST00000615791 ZC3H8-202 protein_coding Homo_sapiens 0 752

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