C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nitrogen fixation gene 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029147 Nfs1-001 ENSMUSG00000027618 10090 - 2:156123639-156144186 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029147
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029147 38.457±5.08 42.764±1.48 25.462±4.19 19.335±5.64 36.478±3.50 26.417±1.05 47.340±1.67 60.465±4.03 38.458±8.42 26.873±0.56 49.159±1.46 35.248±4.70 26.734±5.36 23.097±6.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0006AA CIL_0006AA_0002 CGP 2:156091958-156144186
CIL_000135 CIL_000135_0002 CGP 2:156123639-156145797

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005759 IDA mitochondrial matrix
GO:0005829 IEA cytosol
GO:0006534 IEA cysteine metabolic process
GO:0006777 IEA Mo-molybdopterin cofactor biosynthetic process
GO:0018283 IDA iron incorporation into metallo-sulfur cluster
GO:0030170 IEA pyridoxal phosphate binding
GO:0031071 IEA cysteine desulfurase activity
GO:0042803 IEA protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306750 NFS1-006 protein_coding Homo_sapiens 0 331
ENST00000374085 NFS1-003 protein_coding Homo_sapiens 0 1530
ENST00000374092 NFS1-001 protein_coding Homo_sapiens 0 1550
ENST00000397425 NFS1-009 protein_coding Homo_sapiens 0 1530
ENST00000413203 NFS1-011 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000419569 NFS1-013 protein_coding Homo_sapiens 0 440
ENST00000421540 NFS1-010 processed_transcript Homo_sapiens 0 353
ENST00000440385 NFS1-002 nonsense_mediated_decay Homo_sapiens 0 793
ENST00000456462 NFS1-012 nonsense_mediated_decay Homo_sapiens 0 351
ENST00000480655 NFS1-004 retained_intron Homo_sapiens 0 534
ENST00000489163 NFS1-007 processed_transcript Homo_sapiens 0 575
ENST00000498084 NFS1-005 processed_transcript Homo_sapiens 0 342
ENST00000541387 NFS1-017 protein_coding Homo_sapiens 0 1016

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