C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calsequestrin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029454 Casq2-001 ENSMUSG00000027861 10090 + 3:102086415-102146514 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029454
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029454 0.709±0.43 19.079±3.69 0.412±0.43 1.571±0.15 0.631±0.19 223.657±29.20 0.660±0.45 0.346±0.27 3.611±1.53 11.949±4.73 0.572±0.24 0.605±0.89 0.899±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HI CIL_0008HI_0002 VISTA 3:101762054-102363652

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002027 IMP regulation of heart rate
GO:0005509 IMP calcium ion binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0006937 TAS regulation of muscle contraction
GO:0010649 IEA regulation of cell communication by electrical coupling
GO:0010880 IMP regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
GO:0010881 IMP regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
GO:0016529 TAS sarcoplasmic reticulum
GO:0030018 IDA Z disc
GO:0030314 IDA junctional membrane complex
GO:0033018 IDA sarcoplasmic reticulum lumen
GO:0043267 IDA negative regulation of potassium ion transport
GO:0045214 IMP sarcomere organization
GO:0048306 IEA calcium-dependent protein binding
GO:0051208 IEA sequestering of calcium ion
GO:0051258 IEA protein polymerization
GO:0060048 IEA cardiac muscle contraction
GO:0060306 IDA regulation of membrane repolarization
GO:0071313 IEA cellular response to caffeine
GO:1901017 IDA negative regulation of potassium ion transmembrane transporter activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261448 CASQ2-001 protein_coding Homo_sapiens 0 1297
ENST00000488931 CASQ2-002 processed_transcript Homo_sapiens 1e-26 122

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