C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calsequestrin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027861 Casq2 10090 + 3:102086415-102146514 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029454 Casq2-001 102086415-102146514 protein_coding
  ENSMUST00000159521 Casq2-002 102125814-102145348 processed_transcript
  ENSMUST00000159833 Casq2-003 102144051-102145585 retained_intron
  ENSMUST00000164123 Casq2-004 102086639-102145331 protein_coding
  ENSMUST00000165540 Casq2-005 102086546-102146514 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029454ENSMUST00000159521ENSMUST00000159833ENSMUST00000164123ENSMUST00000165540
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029454 0.709±0.43 N/A 19.079±3.69 0.412±0.43 1.571±0.15 0.631±0.19 223.657±29.20 0.660±0.45 0.346±0.27 3.611±1.53 11.949±4.73 0.572±0.24 0.605±0.89 0.899±0.12
ENSMUST00000159521 0.584±0.00 N/A N/A N/A 0.273±0.00 N/A N/A 0.127±0.04 0.106±0.00 N/A N/A 0.841±0.11 0.559±0.00 N/A
ENSMUST00000159833 N/A 0.134±0.00 N/A 6.975±9.48 0.321±0.00 N/A N/A N/A 0.780±0.26 N/A N/A 2.895±4.13 0.912±0.36 14.413±0.00
ENSMUST00000164123 N/A N/A N/A N/A 0.260±0.18 0.608±0.00 N/A N/A 0.059±0.00 N/A N/A 0.425±0.18 N/A N/A
ENSMUST00000165540 N/A 0.179±0.08 N/A N/A 0.244±0.00 N/A N/A 0.127±0.00 N/A N/A N/A 0.287±0.16 0.034±0.02 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HI CIL_0008HI_0002 VISTA 3:101762054-102363652

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002027 IMP regulation of heart rate
GO:0005509 IMP calcium ion binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0006937 TAS regulation of muscle contraction
GO:0010649 IEA regulation of cell communication by electrical coupling
GO:0010880 IMP regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
GO:0010881 IMP regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
GO:0016529 TAS sarcoplasmic reticulum
GO:0030018 IDA Z disc
GO:0030314 IDA junctional membrane complex
GO:0033018 IDA sarcoplasmic reticulum lumen
GO:0043267 IDA negative regulation of potassium ion transport
GO:0045214 IMP sarcomere organization
GO:0048306 IEA calcium-dependent protein binding
GO:0051208 IEA sequestering of calcium ion
GO:0051258 IEA protein polymerization
GO:0060048 IEA cardiac muscle contraction
GO:0060306 IDA regulation of membrane repolarization
GO:0071313 IEA cellular response to caffeine
GO:1901017 IDA negative regulation of potassium ion transmembrane transporter activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008982 casq2 calsequestrin 2 protein_coding Danio_rerio
ENSG00000118729 CASQ2 calsequestrin 2 (cardiac muscle) protein_coding Homo_sapiens

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