C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008HI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm93 VISTA 9606 1:115492363-116093752
GeneTranscriptPositionBiotype
ENSG00000118729 (CASQ2)
calsequestrin 2 (cardiac muscle) 		ENST00000261448 (CASQ2-001) 115700007-115768781 protein_coding
ENST00000488931 (CASQ2-002) 115727025-115732927 processed_transcript
ENSG00000163393 (SLC22A15)
solute carrier family 22, member 15 		ENST00000369502 (SLC22A15-003) 115976614-116031890 protein_coding
ENST00000369503 (SLC22A15-001) 115976498-116070054 protein_coding
ENST00000481127 (SLC22A15-002) 116032677-116037527 processed_transcript
ENSG00000173218 (VANGL1)
VANGL planar cell polarity protein 1 		ENST00000310260 (VANGL1-003) 115642629-115691854 protein_coding
ENST00000355485 (VANGL1-201) 115641953-115698224 protein_coding
ENST00000369509 (VANGL1-002) 115651402-115691854 protein_coding
ENST00000369510 (VANGL1-001) 115641991-115698224 protein_coding
ENST00000474344 (VANGL1-005) 115671144-115684076 processed_transcript
ENST00000478369 (VANGL1-004) 115671045-115684076 processed_transcript
ENSG00000177551 (NHLH2)
nescient helix loop helix 2 		ENST00000320238 (NHLH2-002) 115836377-115841126 protein_coding
ENST00000369506 (NHLH2-001) 115836692-115843917 protein_coding
ENST00000429731 (NHLH2-003) 115838052-115840741 protein_coding
ENSG00000214204 (HNRNPA1P43)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 43 		ENST00000452680 (HNRNPA1P43-001) 115856910-115857819 processed_pseudogene
ENSG00000228127 (RP11-12L8.1)
 ENST00000438885 (RP11-12L8.1-001) 115919376-115925908 lincRNA
ENSG00000229101 (TCEB1P20)
transcription elongation factor B (SIII), polypeptide 1 pseudogene 20 		ENST00000422460 (TCEB1P20-001) 115556826-115557475 unprocessed_pseudogene
ENSG00000232185 (CNOT7P2)
CCR4-NOT transcription complex, subunit 7 pseudogene 2 		ENST00000441051 (CNOT7P2-001) 115564601-115565432 processed_pseudogene
ENSG00000237993 (RP11-159M11.2)
 ENST00000453128 (RP11-159M11.2-001) 116013813-116017705 antisense
ENSG00000239984 (RN7SL420P)
RNA, 7SL, cytoplasmic 420, pseudogene 		ENST00000463843 (RN7SL420P-201) 115606471-115606768 misc_RNA
ENSG00000271143 (RP11-12L8.2)
 ENST00000604645 (RP11-12L8.2-001) 115916497-115916699 processed_pseudogene
CIL_0008HI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm93 VISTA 10090 3:101762054-102363652
GeneTranscriptPositionBiotype
ENSMUSG00000027861 (Casq2)
calsequestrin 2 		ENSMUST00000029454 (Casq2-001) 102086415-102146514 protein_coding
ENSMUST00000159521 (Casq2-002) 102125814-102145348 processed_transcript
ENSMUST00000159833 (Casq2-003) 102144051-102145585 retained_intron
ENSMUST00000164123 (Casq2-004) 102086639-102145331 protein_coding
ENSMUST00000165540 (Casq2-005) 102086546-102146514 protein_coding
ENSMUSG00000033147 (Slc22a15)
solute carrier family 22 (organic anion/cation transporter), member 15 		ENSMUST00000106928 (Slc22a15-001) 101859924-101924393 protein_coding
ENSMUST00000182040 (Slc22a15-004) 101921015-101924453 processed_transcript
ENSMUST00000182130 (Slc22a15-003) 101858954-101896870 processed_transcript
ENSMUST00000183098 (Slc22a15-005) 101871649-101876614 retained_intron
ENSMUST00000183255 (Slc22a15-002) 101863741-101924379 nonsense_mediated_decay
ENSMUST00000183293 (Slc22a15-006) 101862503-101877887 retained_intron
ENSMUST00000190824 (Slc22a15-007) 101858930-101924449 protein_coding
ENSMUSG00000044313 (Mab21l3)
mab-21-like 3 (C. elegans) 		ENSMUST00000061831 (Mab21l3-001) 101813076-101836223 protein_coding
ENSMUST00000118411 (Mab21l3-002) 101813683-101848959 protein_coding
ENSMUSG00000048540 (Nhlh2)
nescient helix loop helix 2 		ENSMUST00000066187 (Nhlh2-201) 102010145-102015492 protein_coding
ENSMUSG00000100638 (RP23-121B15.3)
predicted gene 29150 		ENSMUST00000191221 (RP23-121B15.3-001) 101963712-101964755 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008HI_0001ENSG00000118729ENST00000261448ENSG00000163393ENST00000369502ENST00000369503ENST00000481127ENSG00000173218ENST00000310260ENST00000355485ENST00000369509ENST00000369510ENSG00000177551ENST00000320238ENST00000369506ENST00000429731ENSG00000214204ENST00000452680ENSG00000228127ENST00000438885ENSG00000229101ENST00000422460ENSG00000232185ENST00000441051ENSG00000237993ENST00000453128ENSG00000239984ENST00000463843ENSG00000271143ENST00000604645CIL_0008HI_0002ENSMUSG00000027861ENSMUST00000029454ENSMUST00000159521ENSMUST00000159833ENSMUST00000164123ENSMUST00000165540ENSMUSG00000033147ENSMUST00000106928ENSMUST00000182040ENSMUST00000182130ENSMUST00000183098ENSMUST00000183255ENSMUST00000190824ENSMUSG00000044313ENSMUST00000061831ENSMUST00000118411ENSMUSG00000048540ENSMUST00000066187ENSMUSG00000100638ENSMUST00000191221
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000118729 ENST00000261448 3.298±0.00 15.090±0.00 0.198±0.00 0.800±0.20 6.777±1.76 14.471±11.28 108.314±29.25 1.037±0.00 10.761±10.66 2.838±1.70 17.959±3.41 1.417±1.10 1.652±0.72 5.838±4.88
ENST00000488931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163393 ENST00000369502 N/A N/A N/A N/A 0.577±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000369503 0.303±0.00 N/A N/A 2.622±0.10 0.338±0.15 0.521±0.04 1.024±0.86 1.538±0.00 0.729±0.00 1.260±0.72 0.157±0.00 0.834±0.74 0.347±0.06 0.501±0.00
ENST00000481127 N/A N/A 3.800±0.00 12.337±0.00 N/A N/A N/A 0.182±0.00 N/A N/A 0.265±0.00 4.680±0.00 N/A N/A
ENSG00000173218 ENST00000310260 N/A N/A N/A N/A 1.334±0.00 N/A N/A 1.345±0.00 N/A 0.694±0.24 N/A N/A N/A N/A
ENST00000355485 N/A 1.117±0.00 0.212±0.00 0.169±0.00 0.913±0.00 1.413±0.00 1.016±0.00 2.152±0.00 0.975±0.40 N/A N/A 1.275±0.52 0.544±0.09 0.331±0.00
ENST00000369509 1.088±0.00 N/A 1.136±0.00 0.487±0.00 N/A 2.833±0.00 0.670±0.06 N/A 1.508±0.83 N/A 0.179±0.00 3.048±1.42 1.844±1.39 4.839±0.00
ENST00000369510 N/A N/A N/A N/A N/A N/A 0.145±0.00 0.289±0.00 N/A N/A 0.065±0.00 N/A N/A N/A
ENST00000474344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000177551 ENST00000320238 N/A 0.023±0.00 N/A 0.274±0.11 N/A N/A 0.071±0.00 N/A N/A 0.012±0.00 N/A 0.191±0.14 0.017±0.00 0.405±0.13
ENST00000369506 0.004±0.00 N/A N/A 0.288±0.23 0.005±0.00 0.003±0.00 0.002±0.00 N/A N/A 0.011±0.00 N/A 0.033±0.00 0.007±0.00 0.024±0.00
ENST00000429731 N/A N/A N/A N/A N/A 0.247±0.00 N/A N/A N/A N/A N/A 0.209±0.00 0.052±0.00 N/A
ENSG00000214204 ENST00000452680 0.122±0.00 0.142±0.00 N/A 0.157±0.00 0.014±0.00 0.039±0.00 0.038±0.00 0.042±0.00 N/A 0.013±0.00 0.012±0.00 0.176±0.00 0.047±0.01 0.089±0.00
ENSG00000228127 ENST00000438885 0.008±0.00 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.185±0.15 N/A 0.693±0.19
ENSG00000229101 ENST00000422460 N/A N/A N/A N/A N/A N/A 0.838±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000232185 ENST00000441051 N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A 0.048±0.00
ENSG00000237993 ENST00000453128 0.053±0.00 N/A N/A N/A N/A 0.251±0.00 0.016±0.00 N/A N/A 0.083±0.00 N/A 0.087±0.00 N/A 0.016±0.00
ENSG00000239984 ENST00000463843 N/A 0.060±0.00 N/A N/A N/A 0.710±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000271143 ENST00000604645 N/A N/A N/A 1.346±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.341±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027861 ENSMUST00000029454 0.709±0.43 N/A 19.079±3.69 0.412±0.43 1.571±0.15 0.631±0.19 223.657±29.20 0.660±0.45 0.346±0.27 3.611±1.53 11.949±4.73 0.572±0.24 0.605±0.89 0.899±0.12
ENSMUST00000159521 0.584±0.00 N/A N/A N/A 0.273±0.00 N/A N/A 0.127±0.04 0.106±0.00 N/A N/A 0.841±0.11 0.559±0.00 N/A
ENSMUST00000159833 N/A 0.134±0.00 N/A 6.975±9.48 0.321±0.00 N/A N/A N/A 0.780±0.26 N/A N/A 2.895±4.13 0.912±0.36 14.413±0.00
ENSMUST00000164123 N/A N/A N/A N/A 0.260±0.18 0.608±0.00 N/A N/A 0.059±0.00 N/A N/A 0.425±0.18 N/A N/A
ENSMUST00000165540 N/A 0.179±0.08 N/A N/A 0.244±0.00 N/A N/A 0.127±0.00 N/A N/A N/A 0.287±0.16 0.034±0.02 N/A
ENSMUSG00000033147 ENSMUST00000106928 1.014±0.15 0.498±0.00 0.920±0.00 N/A 0.909±0.33 1.560±0.25 0.498±0.05 0.419±0.03 0.700±0.45 1.410±0.37 0.089±0.02 1.066±0.31 0.751±0.27 15.706±5.67
ENSMUST00000182040 0.954±0.01 1.260±0.37 1.529±0.09 2.427±0.56 1.014±0.13 3.915±1.00 0.367±0.08 0.464±0.10 2.698±1.53 1.888±0.27 0.077±0.02 1.456±0.46 1.236±0.68 N/A
ENSMUST00000182130 N/A N/A N/A N/A N/A N/A N/A 0.151±0.00 N/A N/A 0.146±0.02 0.540±0.00 1.313±0.57 6.659±0.00
ENSMUST00000183098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A
ENSMUST00000183255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.01 0.349±0.00 N/A N/A
ENSMUST00000183293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190824 1.347±0.00 0.496±0.00 0.481±0.00 1.477±0.00 0.928±0.00 1.373±0.46 N/A 0.295±0.00 0.267±0.06 2.195±0.30 0.173±0.08 0.793±0.19 0.600±0.00 N/A
ENSMUSG00000044313 ENSMUST00000061831 2.162±0.10 0.153±0.02 0.169±0.06 0.037±0.01 0.219±0.11 0.138±0.01 N/A 0.088±0.00 0.015±0.00 0.055±0.00 0.024±0.00 0.386±0.18 0.940±0.77 0.035±0.00
ENSMUST00000118411 5.951±6.04 0.184±0.10 0.296±0.08 0.108±0.07 0.849±0.13 0.176±0.02 0.050±0.02 0.636±0.13 0.046±0.03 0.181±0.05 0.045±0.00 2.756±1.31 4.161±3.60 0.035±0.02
ENSMUSG00000048540 ENSMUST00000066187 0.012±0.00 N/A N/A 4.599±3.15 N/A 0.025±0.00 0.018±0.01 0.018±0.01 0.012±0.01 0.031±0.00 N/A 0.072±0.03 0.006±0.00 0.038±0.04
ENSMUSG00000100638 ENSMUST00000191221 N/A N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 N/A N/A N/A 0.006±0.00 N/A

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