C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GAR1 ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000226796 GAR1-003 ENSG00000109534 9606 + 4:109815553-109824737 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000226796
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000226796 5.844±0.00 7.350±0.00 0.062±0.00 2.209±0.00 2.683±2.39 2.351±1.67 2.848±0.00 4.842±0.00 1.007±0.93 4.305±0.00 3.834±0.00 16.150±8.53 8.343±3.78 3.620±1.04

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0005261 TAS cation channel activity
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006364 IEA rRNA processing
GO:0006812 TAS cation transport
GO:0031429 IEA box H/ACA snoRNP complex
GO:0042254 IEA ribosome biogenesis
GO:0044822 IDA poly(A) RNA binding
GO:0098655 TAS cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029643 Gar1-001 protein_coding Mus_musculus 0 627
ENSMUST00000149071 Gar1-003 protein_coding Mus_musculus 0 525
ENSMUST00000120519 Gm13350-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000134174 Gar1-006 protein_coding Mus_musculus 0 267

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