C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029803 Eif4e-201 ENSMUSG00000028156 10090 + 3:138526191-138557599 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029803
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029803 6.828±1.61 8.343±1.79 18.266±7.11 36.679±11.89 6.468±2.37 4.505±2.28 13.538±1.03 7.619±1.61 19.405±14.98 7.195±2.46 12.887±7.71 14.475±5.23 23.457±13.74 22.491±14.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LO CIL_0008LO_0002 VISTA 3:138442669-139045155

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 IEA G1/S transition of mitotic cell cycle
GO:0000932 IEA cytoplasmic mRNA processing body
GO:0003743 IDA translation initiation factor activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005845 IDA mRNA cap binding complex
GO:0006413 IEA translational initiation
GO:0006417 ISS regulation of translation
GO:0010494 ISS cytoplasmic stress granule
GO:0016281 ISS eukaryotic translation initiation factor 4F complex
GO:0016442 IEA RISC complex
GO:0030324 IEA lung development
GO:0031370 IEA eukaryotic initiation factor 4G binding
GO:0033391 IDA chromatoid body
GO:0043234 IEA protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0045931 IEA positive regulation of mitotic cell cycle
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000280892 EIF4E-002 protein_coding Homo_sapiens 0 1218
ENST00000422311 RP5-1022P6.3-001 processed_pseudogene Homo_sapiens 0 798
ENST00000422816 EIF4EP2-001 processed_pseudogene Homo_sapiens 0 970
ENST00000450253 EIF4E-001 protein_coding Homo_sapiens 0 2457
ENST00000498782 RP11-139K4.4-001 processed_pseudogene Homo_sapiens 0 850
ENST00000504432 EIF4E-005 protein_coding Homo_sapiens 0 1199
ENST00000504472 EIF4E-006 processed_transcript Homo_sapiens 0 209
ENST00000505194 EIF4E-010 processed_transcript Homo_sapiens 0 712
ENST00000505829 EIF4E-009 retained_intron Homo_sapiens 0 311
ENST00000505992 EIF4E-007 protein_coding Homo_sapiens 0 621
ENST00000507665 EIF4E-003 retained_intron Homo_sapiens 0 612
ENST00000511644 EIF4E-008 protein_coding Homo_sapiens 0 566
ENST00000515638 EIF4E-011 nonsense_mediated_decay Homo_sapiens 0 773
ENST00000528228 RP11-138H14.1-001 processed_pseudogene Homo_sapiens 0 830

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