C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029938 Gtf2b-201 ENSMUSG00000028271 10090 + 3:142765226-142783603 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029938
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029938 12.098±0.84 14.712±1.58 19.335±3.36 24.749±5.38 12.238±2.25 11.578±1.76 8.473±0.47 14.426±2.39 23.692±17.00 16.050±1.43 7.251±0.59 18.599±8.89 60.435±12.47 35.599±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000F6 CIL_0000F6_0002 CGP 3:142765226-142882004

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001047 IDA core promoter binding
GO:0003677 IDA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008134 IEA transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0017025 IEA TBP-class protein binding
GO:0046966 IEA thyroid hormone receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370500 GTF2B-001 protein_coding Homo_sapiens 0 1415
ENST00000418217 GTF2B-002 protein_coding Homo_sapiens 0 883
ENST00000448623 GTF2B-003 protein_coding Homo_sapiens 0 880
ENST00000471296 GTF2B-006 processed_transcript Homo_sapiens 0 340
ENST00000471471 GTF2B-007 processed_transcript Homo_sapiens 0 248
ENST00000486078 GTF2B-004 processed_transcript Homo_sapiens 0 401
ENST00000494819 GTF2B-005 processed_transcript Homo_sapiens 0 750

Loading