C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exosome component 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030003 Exosc3-001 ENSMUSG00000028322 10090 - 4:45316613-45320629 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030003
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030003 28.141±7.50 9.870±0.20 8.696±2.25 10.741±0.75 7.756±2.53 2.450±0.17 6.262±0.97 15.230±9.47 7.155±0.56 5.617±0.47 21.781±11.38 26.674±11.35 21.249±2.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081A CIL_00081A_0002 VISTA 4:45205842-45807105
CIL_0006TH CIL_0006TH_0002 CGP 4:45297127-45342732
CIL_0006TG CIL_0006TG_0002 CGP 4:45316613-45379759

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000176 IEA nuclear exosome (RNase complex)
GO:0000177 IEA cytoplasmic exosome (RNase complex)
GO:0000178 ISS exosome (RNase complex)
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0004527 IEA exonuclease activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 ISS nucleolus
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0035327 IEA transcriptionally active chromatin
GO:0043928 IEA exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0045006 IEA DNA deamination
GO:0045190 IMP isotype switching
GO:0045830 IMP positive regulation of isotype switching
GO:0071034 IEA CUT catabolic process
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000327304 EXOSC3-001 protein_coding Homo_sapiens 0 854
ENST00000396521 EXOSC3-002 protein_coding Homo_sapiens 0 416
ENST00000448649 EXOSC3P1-001 processed_pseudogene Homo_sapiens 0 555
ENST00000465229 EXOSC3-005 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000465860 EXOSC3-007 retained_intron Homo_sapiens 0 468
ENST00000482614 EXOSC3-008 processed_transcript Homo_sapiens 0 516
ENST00000489414 EXOSC3-009 processed_transcript Homo_sapiens 0 640
ENST00000490516 EXOSC3-004 processed_transcript Homo_sapiens 0 220
ENST00000496910 EXOSC3-006 retained_intron Homo_sapiens 0 261
ENST00000540557 RP11-613M10.9-001 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000594464 EXOSC3P2-001 processed_pseudogene Homo_sapiens 0 542

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