C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006TH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165275-ENSG00000107371 CGP 9606 9:37753803-37801437
GeneTranscriptPositionBiotype
ENSG00000107371 (EXOSC3)
exosome component 3 		ENST00000327304 (EXOSC3-001) 37779714-37785057 protein_coding
ENST00000396521 (EXOSC3-002) 37780607-37785064 protein_coding
ENST00000465229 (EXOSC3-005) 37766978-37785061 nonsense_mediated_decay
ENST00000465860 (EXOSC3-007) 37781804-37784745 retained_intron
ENST00000482614 (EXOSC3-008) 37780806-37801437 processed_transcript
ENST00000489414 (EXOSC3-009) 37780691-37800709 processed_transcript
ENST00000490516 (EXOSC3-004) 37780588-37784713 processed_transcript
ENST00000496910 (EXOSC3-006) 37783872-37784745 retained_intron
ENSG00000122741 (DCAF10)
DDB1 and CUL4 associated factor 10 		ENST00000242323 (DCAF10-201) 37800554-37867666 protein_coding
ENST00000377724 (DCAF10-001) 37800502-37863325 protein_coding
ENST00000461549 (DCAF10-003) 37819294-37860441 processed_transcript
ENST00000478453 (DCAF10-004) 37858480-37861441 processed_transcript
ENST00000483167 (DCAF10-002) 37854819-37863325 processed_transcript
ENSG00000165275 (TRMT10B)
tRNA methyltransferase 10 homolog B (S. cerevisiae) 		ENST00000297994 (TRMT10B-001) 37753817-37778972 protein_coding
ENST00000377753 (TRMT10B-201) 37753803-37778965 protein_coding
ENST00000377754 (TRMT10B-002) 37753817-37778681 protein_coding
ENST00000488673 (TRMT10B-003) 37753817-37778022 nonsense_mediated_decay
ENST00000509577 (TRMT10B-008) 37769557-37770755 retained_intron
ENST00000537016 (TRMT10B-007) 37753817-37776430 nonsense_mediated_decay
ENST00000537911 (TRMT10B-202) 37753803-37778965 protein_coding
ENST00000538370 (TRMT10B-004) 37753817-37768163 nonsense_mediated_decay
ENST00000540616 (TRMT10B-005) 37753817-37763757 nonsense_mediated_decay

Homo sapiens Ensembl (GRCh38)

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CIL_0006TH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035601-ENSMUSG00000028322 CGP 10090 4:45297127-45342732
GeneTranscriptPositionBiotype
ENSMUSG00000028322 (Exosc3)
exosome component 3 		ENSMUST00000030003 (Exosc3-001) 45316613-45320629 protein_coding
ENSMUST00000130843 (Exosc3-002) 45317489-45320604 processed_transcript
ENSMUST00000143111 (Exosc3-003) 45316794-45320336 processed_transcript
ENSMUST00000152056 (Exosc3-004) 45316954-45342732 protein_coding
ENSMUSG00000035572 (Dcaf10)
DDB1 and CUL4 associated factor 10 		ENSMUST00000107798 (Dcaf10-002) 45342182-45374956 processed_transcript
ENSMUST00000130821 (Dcaf10-004) 45342120-45370479 processed_transcript
ENSMUST00000153803 (Dcaf10-003) 45370346-45375667 protein_coding
ENSMUST00000155551 (Dcaf10-001) 45342101-45379759 protein_coding
ENSMUSG00000035601 (Trmt10b)
tRNA methyltransferase 10B 		ENSMUST00000044673 (Trmt10b-001) 45297127-45316131 protein_coding
ENSMUST00000107800 (Trmt10b-002) 45300434-45315142 protein_coding
ENSMUST00000126972 (Trmt10b-003) 45300434-45315142 processed_transcript
ENSMUST00000141659 (Trmt10b-005) 45300414-45308721 processed_transcript
ENSMUST00000142785 (Trmt10b-007) 45300434-45304385 processed_transcript
ENSMUST00000144781 (Trmt10b-004) 45297155-45304388 protein_coding
ENSMUST00000145756 (Trmt10b-006) 45314098-45315048 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006TH_0001ENSG00000107371ENST00000327304ENST00000396521ENST00000465229ENST00000465860ENST00000482614ENST00000489414ENST00000490516ENST00000496910ENSG00000122741ENST00000242323ENST00000377724ENST00000461549ENST00000478453ENST00000483167ENSG00000165275ENST00000297994ENST00000377753ENST00000377754ENST00000488673ENST00000509577ENST00000537016ENST00000537911ENST00000538370ENST00000540616CIL_0006TH_0002ENSMUSG00000028322ENSMUST00000030003ENSMUST00000130843ENSMUST00000143111ENSMUST00000152056ENSMUSG00000035572ENSMUST00000107798ENSMUST00000130821ENSMUST00000153803ENSMUST00000155551ENSMUSG00000035601ENSMUST00000044673ENSMUST00000107800ENSMUST00000126972ENSMUST00000141659ENSMUST00000142785ENSMUST00000144781ENSMUST00000145756
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006TH_0001ENSG00000107371ENST00000327304ENST00000396521ENST00000489414ENSG00000122741ENST00000242323ENST00000377724ENSG00000165275ENST00000297994ENST00000377753ENST00000488673ENST00000537911ENST00000540616CIL_0006TH_0002ENSMUSG00000028322ENSMUST00000030003ENSMUST00000130843ENSMUST00000143111ENSMUST00000152056ENSMUSG00000035572ENSMUST00000107798ENSMUST00000130821ENSMUST00000153803ENSMUST00000155551ENSMUSG00000035601ENSMUST00000044673ENSMUST00000107800ENSMUST00000126972ENSMUST00000141659ENSMUST00000144781
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107371 ENST00000327304 N/A N/A N/A N/A N/A N/A 1.945±0.00 N/A 6.947±0.00 5.745±0.00 N/A 6.932±0.00 N/A N/A
ENST00000396521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.867±0.00 29.506±0.00 57.744±0.00
ENST00000465229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.614±0.00 N/A N/A
ENST00000490516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000122741 ENST00000242323 4.256±0.00 4.228±0.00 N/A 2.225±0.60 3.672±0.24 4.831±0.00 0.699±0.00 4.698±2.50 2.974±0.00 1.583±0.32 1.602±0.93 3.368±0.91 2.427±0.65 4.884±0.00
ENST00000377724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.419±7.17
ENST00000461549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165275 ENST00000297994 0.640±0.00 2.281±0.00 N/A 2.037±0.00 1.060±0.24 0.582±0.00 0.155±0.00 0.619±0.20 N/A N/A N/A 2.164±1.24 0.489±0.20 1.125±0.56
ENST00000377753 N/A 1.310±0.00 N/A N/A 0.775±0.14 1.479±0.00 0.468±0.11 0.936±0.00 1.201±0.75 N/A 0.344±0.00 1.218±0.06 N/A 1.000±0.00
ENST00000377754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488673 N/A 1.266±0.00 N/A N/A 0.686±0.33 0.988±0.00 0.416±0.00 0.925±0.00 N/A 1.617±0.00 N/A 1.220±0.70 0.616±0.06 0.834±0.00
ENST00000509577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537911 N/A 1.256±0.00 N/A 1.606±0.00 1.166±0.00 N/A 0.840±0.00 1.270±0.00 N/A 0.415±0.00 N/A N/A N/A 1.036±0.00
ENST00000538370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.837±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028322 ENSMUST00000030003 N/A 28.141±7.50 9.870±0.20 8.696±2.25 10.741±0.75 7.756±2.53 2.450±0.17 6.262±0.97 15.230±9.47 7.155±0.56 5.617±0.47 21.781±11.38 26.674±11.35 21.249±2.04
ENSMUST00000130843 11.963±3.33 32.107±8.38 9.013±0.00 8.665±1.18 10.840±1.43 13.043±3.17 4.836±1.66 8.069±2.48 8.161±3.40 11.018±1.51 N/A 18.335±4.92 7.275±0.00 12.506±0.81
ENSMUST00000143111 N/A N/A N/A 11.061±0.00 N/A N/A N/A N/A N/A N/A N/A 23.966±0.00 41.893±14.66 52.345±0.00
ENSMUST00000152056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.077±0.00
ENSMUSG00000035572 ENSMUST00000107798 5.498±0.20 6.579±1.65 2.789±0.01 2.516±0.00 3.835±0.84 3.304±0.76 1.584±0.05 3.265±0.46 3.727±1.15 3.680±0.62 1.251±0.19 5.073±1.14 4.729±1.55 7.382±2.72
ENSMUST00000130821 4.878±0.00 19.768±11.61 N/A N/A 8.350±2.22 6.433±1.19 N/A N/A 2.764±0.02 5.570±1.32 N/A 9.890±3.10 N/A N/A
ENSMUST00000153803 N/A N/A N/A N/A 3.682±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155551 2.298±0.46 N/A 2.076±0.00 2.481±1.24 1.735±0.24 1.302±0.14 1.001±0.06 1.596±0.29 2.034±0.63 2.145±0.30 1.020±0.10 2.243±0.58 2.258±0.62 1.328±0.48
ENSMUSG00000035601 ENSMUST00000044673 0.850±0.23 0.693±0.45 3.109±0.41 4.063±2.49 1.073±0.53 1.140±0.53 0.710±0.12 1.472±0.39 1.269±0.81 1.154±0.32 1.074±0.16 1.660±0.98 1.927±1.01 2.293±0.73
ENSMUST00000107800 N/A N/A N/A 6.385±0.00 N/A N/A N/A N/A N/A N/A 0.614±0.14 6.309±0.00 3.937±0.51 5.435±5.94
ENSMUST00000126972 N/A N/A N/A N/A N/A N/A N/A N/A 0.405±0.00 0.913±0.00 1.003±0.29 2.416±1.94 4.636±1.19 N/A
ENSMUST00000141659 N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.493±0.16 N/A N/A
ENSMUST00000142785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144781 N/A N/A N/A N/A N/A 0.691±0.00 N/A N/A N/A N/A 1.042±0.07 4.634±3.91 5.245±1.17 24.191±0.00
ENSMUST00000145756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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