C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: formin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030039 Fmn2-201 ENSMUSG00000028354 10090 + 1:174501825-174822717 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030039
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030039 0.252±0.25 0.302±0.04 0.026±0.01 5.866±0.81 0.126±0.02 0.148±0.04 0.019±0.01 0.022±0.01 0.022±0.02 0.070±0.03 0.039±0.02 0.464±0.16 0.183±0.15 0.161±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KG CIL_0006KG_0002 CGP 1:174501825-174921819

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 ISS actin binding
GO:0005730 ISS nucleolus
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005819 IDA spindle
GO:0005829 ISS cytosol
GO:0005884 IEA actin filament
GO:0005886 IEA plasma membrane
GO:0005902 IDA microvillus
GO:0005938 IDA cell cortex
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007275 IEA multicellular organismal development
GO:0015031 IEA protein transport
GO:0015629 ISS actin cytoskeleton
GO:0016192 IMP vesicle-mediated transport
GO:0016344 IMP meiotic chromosome movement towards spindle pole
GO:0030659 IDA cytoplasmic vesicle membrane
GO:0040038 IMP polar body extrusion after meiotic divisions
GO:0042177 ISS negative regulation of protein catabolic process
GO:0043066 ISS negative regulation of apoptotic process
GO:0045010 IEA actin nucleation
GO:0046907 IMP intracellular transport
GO:0048477 IMP oogenesis
GO:0051017 IMP actin filament bundle assembly
GO:0051295 IMP establishment of meiotic spindle localization
GO:0051758 IMP homologous chromosome movement towards spindle pole involved in homologous chromosome segregation
GO:0070649 IMP formin-nucleated actin cable assembly
GO:0071456 ISS cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319653 FMN2-001 protein_coding Homo_sapiens 0 2276
ENST00000439323 RP11-702C7.2-001 processed_pseudogene Homo_sapiens 0 575
ENST00000441342 FMN2-005 protein_coding Homo_sapiens 0 398
ENST00000463398 FMN2-004 processed_transcript Homo_sapiens 0 573
ENST00000545751 FMN2-202 protein_coding Homo_sapiens 0 1179

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