C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NDC1 transmembrane nucleoporin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030357 Ndc1-003 ENSMUSG00000028614 10090 + 4:107367880-107414333 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000030357
Transcript ID Adipose Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000030357 1.958±0.46 0.491±0.00 3.754±1.54 1.133±0.00 2.360±0.24 0.698±0.06 1.680±0.00 5.612±2.71 1.923±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083F CIL_00083F_0002 VISTA 4:107302048-107904613

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005643 IDA nuclear pore
GO:0005737 IDA cytoplasm
GO:0007129 IMP synapsis
GO:0007283 IMP spermatogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371429 NDC1-001 protein_coding Homo_sapiens 0 2405

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