C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: patched homolog 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030443 Ptch2-001 ENSMUSG00000028681 10090 + 4:117096075-117115383 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030443
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030443 8.366±2.08 4.922±0.68 0.748±0.13 2.835±0.58 4.924±1.78 1.145±0.28 0.633±0.13 1.391±0.43 0.362±0.12 1.666±0.46 0.172±0.03 5.119±2.37 0.309±0.14 4.556±2.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0002 VISTA 4:117090982-117692314

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005119 IEA smoothened binding
GO:0007165 IEA signal transduction
GO:0008158 IEA hedgehog receptor activity
GO:0008544 IMP epidermis development
GO:0016021 IEA integral component of membrane
GO:0042633 IMP hair cycle
GO:0043588 IMP skin development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372192 PTCH2-001 protein_coding Homo_sapiens 0 4405
ENST00000447098 PTCH2-201 protein_coding Homo_sapiens 0 4150

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