C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caspase 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030747 Casp9-001 ENSMUSG00000028914 10090 + 4:141793612-141815976 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030747
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030747 7.537±0.65 9.420±0.83 7.003±0.15 7.483±3.28 8.758±1.59 9.958±0.38 3.627±0.98 10.497±0.39 6.399±0.92 9.696±0.14 0.846±0.42 11.195±2.71 7.481±3.54 3.396±1.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QM CIL_0007QM_0002 VISTA 4:141236761-141837859

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004197 IDA cysteine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005829 IDA cytosol
GO:0006508 RCA proteolysis
GO:0006915 IDA apoptotic process
GO:0006919 IMP activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007568 IEA aging
GO:0008233 RCA peptidase activity
GO:0008630 ISS intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009411 IMP response to UV
GO:0014070 IEA response to organic cyclic compound
GO:0017124 ISS SH3 domain binding
GO:0019901 ISS protein kinase binding
GO:0032025 IEA response to cobalt ion
GO:0032355 IEA response to estradiol
GO:0032496 IEA response to lipopolysaccharide
GO:0034349 IEA glial cell apoptotic process
GO:0034644 ISS cellular response to UV
GO:0042770 ISS signal transduction in response to DNA damage
GO:0043065 IEA positive regulation of apoptotic process
GO:0043293 IEA apoptosome
GO:0043525 IMP positive regulation of neuron apoptotic process
GO:0046677 IEA response to antibiotic
GO:0071407 IEA cellular response to organic cyclic compound
GO:0071549 IDA cellular response to dexamethasone stimulus
GO:2001020 ISS regulation of response to DNA damage stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333868 CASP9-001 protein_coding Homo_sapiens 0 817
ENST00000348549 CASP9-002 protein_coding Homo_sapiens 0 259
ENST00000375890 CASP9-008 protein_coding Homo_sapiens 0 817
ENST00000400777 CASP9-006 nonsense_mediated_decay Homo_sapiens 0 734
ENST00000424908 CASP9-007 protein_coding Homo_sapiens 0 388
ENST00000440484 CASP9-005 protein_coding Homo_sapiens 0 259
ENST00000447522 CASP9-003 protein_coding Homo_sapiens 0 614
ENST00000469637 CASP9-004 protein_coding Homo_sapiens 1e-35 154
ENST00000474305 CASP9-011 nonsense_mediated_decay Homo_sapiens 0 750
ENST00000546424 CASP9-009 protein_coding Homo_sapiens 0 732
ENST00000546969 CASP9-012 retained_intron Homo_sapiens 0 259

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