C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoribosyl pyrophosphate amidotransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031158 Ppat-003 ENSMUSG00000029246 10090 - 5:76915044-76951165 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000031158
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000031158 9.373±0.00 18.076±0.00 16.672±11.41 4.674±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084Q CIL_00084Q_0002 VISTA 5:76362343-76966797
CIL_0008G9 CIL_0008G9_0002 VISTA 5:76829880-77430993
CIL_00025Q CIL_00025Q_0002 CGP 5:76873659-76951578
CIL_0001WN CIL_0001WN_0002 CGP 5:76913249-76967509

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264220 PPAT-001 protein_coding Homo_sapiens 0 963
ENST00000425339 PPAT-002 retained_intron Homo_sapiens 0 636
ENST00000496669 PPATP1-001 processed_pseudogene Homo_sapiens 0 741
ENST00000507648 PPAT-003 processed_transcript Homo_sapiens 0 628
ENST00000507724 PPAT-004 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000510643 PPAT-005 nonsense_mediated_decay Homo_sapiens 0 451

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