C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RUN and FYVE domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031229 Rufy3-201 ENSMUSG00000029291 10090 + 5:88583574-88642671 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLungMuscleOvaryENSMUST00000031229
Transcript ID Adipose Bladder Brain Breast Colon Heart Lung Muscle Ovary
ENSMUST00000031229 0.505±0.37 0.900±0.00 49.809±14.08 0.108±0.03 1.025±0.00 0.141±0.04 0.252±0.00 0.382±0.36 1.285±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D6 CIL_0000D6_0002 CGP 5:88554483-88642671
CIL_0005LT CIL_0005LT_0003 CGP 5:88583574-88676171

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0030175 IEA filopodium
GO:0030426 IEA growth cone
GO:0050771 IEA negative regulation of axonogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000039973 rufy3-201 protein_coding Danio_rerio 0 697
ENST00000226328 RUFY3-001 protein_coding Homo_sapiens 0 2156
ENST00000381006 RUFY3-002 protein_coding Homo_sapiens 0 1903
ENST00000417478 RUFY3-005 protein_coding Homo_sapiens 0 1500
ENST00000502653 RUFY3-003 protein_coding Homo_sapiens 0 1506
ENST00000503876 RUFY3-007 protein_coding Homo_sapiens 0 617
ENST00000504805 RUFY3-009 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000509159 CTC-278L1.1-001 processed_pseudogene Homo_sapiens 0 1138
ENST00000513597 RUFY3-004 protein_coding Homo_sapiens 0 800

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