C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 10 (sodium/bile acid cotransporter family), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031263 Slc10a6-001 ENSMUSG00000029321 10090 - 5:103605711-103629403 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031263
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031263 3.559±2.54 0.801±0.15 2.590±0.32 0.057±0.03 2.689±0.24 0.545±0.15 1.025±0.42 0.372±0.09 0.037±0.03 11.952±3.53 0.562±0.21 1.236±0.47 0.342±0.27 0.400±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006J4 CIL_0006J4_0002 CGP 5:103425192-103629403
CIL_0006J3 CIL_0006J3_0002 CGP 5:103605711-103656010

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006814 IEA sodium ion transport
GO:0008508 IEA bile acid:sodium symporter activity
GO:0015721 IEA bile acid and bile salt transport
GO:0016021 IEA integral component of membrane
GO:0043250 IEA sodium-dependent organic anion transmembrane transporter activity
GO:0043251 IEA sodium-dependent organic anion transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273905 SLC10A6-001 protein_coding Homo_sapiens 0 773
ENST00000505535 SLC10A6-002 processed_transcript Homo_sapiens 0 520

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