C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 10 (sodium/bile acid cotransporter), member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000273905 SLC10A6-001 ENSG00000145283 9606 - 4:86823468-86849263 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000273905
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000273905 3.129±0.00 0.387±0.00 0.045±0.00 0.158±0.09 0.949±0.33 0.963±0.67 0.168±0.08 0.156±0.03 1.086±0.00 0.656±0.00 0.646±0.00 0.520±0.40 0.077±0.06 0.617±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006J4 CIL_0006J4_0001 CGP 4:86594315-86849263
CIL_0006J3 CIL_0006J3_0001 CGP 4:86823468-86936202

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 TAS plasma membrane
GO:0006814 IEA sodium ion transport
GO:0008508 IEA bile acid:sodium symporter activity
GO:0015721 IEA bile acid and bile salt transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0043250 IEA sodium-dependent organic anion transmembrane transporter activity
GO:0043251 IEA sodium-dependent organic anion transport
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031263 Slc10a6-001 protein_coding Mus_musculus 0 773

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