C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: platelet factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031320 Pf4-201 ENSMUSG00000029373 10090 + 5:90772435-90773381 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031320
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031320 29.292±2.56 6.788±2.17 38.199±6.90 5.379±3.47 39.022±12.33 20.566±4.42 24.297±6.63 3.139±0.80 115.989±120.01 23.936±2.01 4.538±1.04 8.323±2.64 20.552±15.08 1.776±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00035Y CIL_00035Y_0002 CGP 5:90772435-90788086

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005615 IEA extracellular space
GO:0006461 IEA protein complex assembly
GO:0008009 IEA chemokine activity
GO:0008201 ISS heparin binding
GO:0016525 ISS negative regulation of angiogenesis
GO:0019221 ISS cytokine-mediated signaling pathway
GO:0030168 ISS platelet activation
GO:0030595 ISS leukocyte chemotaxis
GO:0030816 ISS positive regulation of cAMP metabolic process
GO:0031091 IEA platelet alpha granule
GO:0031982 IEA vesicle
GO:0042127 ISS regulation of cell proliferation
GO:0043234 IEA protein complex
GO:0043950 ISS positive regulation of cAMP-mediated signaling
GO:0045653 ISS negative regulation of megakaryocyte differentiation
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0048248 ISS CXCR3 chemokine receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000226524 PF4V1-001 protein_coding Homo_sapiens 3e-40 169
ENST00000296029 PF4-001 protein_coding Homo_sapiens 5.99756e-43 178

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