C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor-like 6 interacting protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031351 Arl6ip4-001 ENSMUSG00000029404 10090 + 5:124116099-124118196 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031351
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031351 13.787±1.19 12.758±3.65 28.679±0.16 22.358±5.44 12.926±2.47 15.050±2.51 8.974±1.51 15.725±1.50 27.566±17.36 15.899±0.60 21.548±1.67 15.343±5.09 23.968±10.13 17.426±2.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_0002P6 CIL_0002P6_0002 CGP 5:124112297-124118196
CIL_0002P7 CIL_0002P7_0002 CGP 5:124116089-124249760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315580 ARL6IP4-001 protein_coding Homo_sapiens 0 514
ENST00000357866 ARL6IP4-011 protein_coding Homo_sapiens 0 206
ENST00000392433 ARL6IP4-010 retained_intron Homo_sapiens 0 438
ENST00000392435 ARL6IP4-018 protein_coding Homo_sapiens 0 438
ENST00000412505 ARL6IP4-021 protein_coding Homo_sapiens 0 213
ENST00000413381 ARL6IP4-013 protein_coding Homo_sapiens 0 538
ENST00000426960 ARL6IP4-014 protein_coding Homo_sapiens 0 507
ENST00000439686 ARL6IP4-019 protein_coding Homo_sapiens 0 606
ENST00000442210 ARL6IP4-016 retained_intron Homo_sapiens 7e-33 145
ENST00000453766 ARL6IP4-003 protein_coding Homo_sapiens 0 608
ENST00000454885 ARL6IP4-004 protein_coding Homo_sapiens 0 549
ENST00000456762 ARL6IP4-015 protein_coding Homo_sapiens 0 438
ENST00000536073 ARL6IP4-022 retained_intron Homo_sapiens 0 250
ENST00000536502 ARL6IP4-007 retained_intron Homo_sapiens 0 507
ENST00000539576 ARL6IP4-012 retained_intron Homo_sapiens 1.99993e-41 174
ENST00000539770 ARL6IP4-005 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000540382 ARL6IP4-009 retained_intron Homo_sapiens 1.99993e-41 174
ENST00000540708 ARL6IP4-006 retained_intron Homo_sapiens 9e-21 106
ENST00000543566 ARL6IP4-002 protein_coding Homo_sapiens 0 507

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