C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger, CCHC domain containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031376 Zcchc8-201 ENSMUSG00000029427 10090 - 5:123698302-123721044 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031376
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031376 3.560±1.31 9.627±1.32 3.226±0.24 5.246±1.50 5.243±2.29 7.128±2.90 1.839±0.57 3.711±0.96 4.092±2.71 6.178±1.16 1.785±0.44 7.409±2.38 5.135±2.14 9.555±1.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZD CIL_0002ZD_0002 CGP 5:123577795-123721044
CIL_0002PD CIL_0002PD_0002 CGP 5:123698302-123749414

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000536306 ZCCHC8-003 protein_coding Homo_sapiens 0 1229
ENST00000536663 ZCCHC8-006 protein_coding Homo_sapiens 0 695
ENST00000538116 ZCCHC8-005 protein_coding Homo_sapiens 0 303
ENST00000538493 ZCCHC8-009 retained_intron Homo_sapiens 8.96831e-44 182
ENST00000540586 ZCCHC8-004 protein_coding Homo_sapiens 0 477
ENST00000543897 ZCCHC8-002 protein_coding Homo_sapiens 0 1229
ENST00000544054 ZCCHC8-007 protein_coding Homo_sapiens 0 815
ENST00000546149 ZCCHC8-010 retained_intron Homo_sapiens 0 355

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