C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 33A (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031388 Vps33a-201 ENSMUSG00000029434 10090 - 5:123528764-123573015 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031388
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031388 8.891±0.62 11.291±0.72 6.507±0.07 15.073±2.23 8.032±1.81 5.886±1.08 3.885±0.29 8.212±2.48 6.286±2.42 6.609±0.66 5.350±0.74 8.353±3.16 8.536±0.47 2.702±0.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZE CIL_0002ZE_0002 CGP 5:123528764-123684618

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 ISA vesicle-mediated transport
GO:0030220 IMP platelet formation
GO:0043473 IMP pigmentation
GO:0048070 IMP regulation of developmental pigmentation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267199 VPS33A-001 protein_coding Homo_sapiens 0 2017
ENST00000451053 VPS33A-002 protein_coding Homo_sapiens 0 558
ENST00000535844 RP11-512M8.5-001 nonsense_mediated_decay Homo_sapiens 0 558
ENST00000542310 VPS33A-004 processed_transcript Homo_sapiens 0 475
ENST00000542790 VPS33A-006 retained_intron Homo_sapiens 0 350
ENST00000543633 VPS33A-003 nonsense_mediated_decay Homo_sapiens 0 1873
ENST00000544349 VPS33A-005 retained_intron Homo_sapiens 0 730

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