C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: matrix metallopeptidase 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031390 Mmp17-001 ENSMUSG00000029436 10090 + 5:129584169-129608875 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031390
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031390 6.089±4.55 1.107±0.12 2.363±0.11 13.182±7.02 0.951±0.25 6.881±1.62 0.749±0.23 1.066±0.20 0.241±0.07 1.366±0.18 0.147±0.06 6.158±2.84 1.172±1.25 0.460±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042X CIL_00042X_0002 CGP 5:129501231-129608875

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004222 IEA metalloendopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005886 IEA plasma membrane
GO:0006508 IEA proteolysis
GO:0008270 IEA zinc ion binding
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360564 MMP17-001 protein_coding Homo_sapiens 0 1557
ENST00000534865 MMP17-005 protein_coding Homo_sapiens 0 1074
ENST00000535004 MMP17-010 protein_coding Homo_sapiens 0 287
ENST00000535182 MMP17-012 processed_transcript Homo_sapiens 0 357
ENST00000535271 MMP17-011 retained_intron Homo_sapiens 0 429
ENST00000535291 MMP17-002 protein_coding Homo_sapiens 0 1498
ENST00000537848 MMP17-007 nonsense_mediated_decay Homo_sapiens 0 287
ENST00000542648 MMP17-008 protein_coding Homo_sapiens 0 616
ENST00000545671 MMP17-003 protein_coding Homo_sapiens 0 542
ENST00000545790 MMP17-004 protein_coding Homo_sapiens 0 488

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