C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin related protein 2/3 complex, subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031421 Arpc3-002 ENSMUSG00000029465 10090 + 5:122395814-122406063 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverOvaryPlacentaTestisENSMUST00000031421
Transcript ID Brain Breast Liver Ovary Placenta Testis
ENSMUST00000031421 49.234±0.00 17.822±0.00 36.980±0.00 68.785±23.84 114.116±59.17 5.188±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768
CIL_0004MV CIL_0004MV_0002 CGP 5:122371876-122406179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005737 IEA cytoplasm
GO:0005885 TAS Arp2/3 protein complex
GO:0030027 IDA lamellipodium
GO:0034314 IEA Arp2/3 complex-mediated actin nucleation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228825 ARPC3-001 protein_coding Homo_sapiens 0 597
ENST00000397300 RP11-680H20.1-001 processed_pseudogene Homo_sapiens 0 496
ENST00000437218 ARPC3P1-001 processed_pseudogene Homo_sapiens 0 501
ENST00000448802 ARPC3P5-001 processed_pseudogene Homo_sapiens 0 529
ENST00000457786 ARPC3P2-001 processed_pseudogene Homo_sapiens 0 470
ENST00000467622 ARPC3-006 retained_intron Homo_sapiens 0 207

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