C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin related protein 2/3 complex, subunit 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029465 Arpc3 10090 + 5:122391878-122406179 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031421 Arpc3-002 122395814-122406063 protein_coding
  ENSMUST00000102525 Arpc3-001 122391878-122406179 protein_coding
  ENSMUST00000111713 Arpc3-004 122400398-122406137 protein_coding
  ENSMUST00000111716 Arpc3-003 122400271-122406146 protein_coding
  ENSMUST00000126247 Arpc3-007 122403414-122404781 retained_intron
  ENSMUST00000141395 Arpc3-006 122391966-122397193 retained_intron
  ENSMUST00000148913 Arpc3-005 122391922-122402326 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031421ENSMUST00000102525ENSMUST00000111713ENSMUST00000148913
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031421 N/A N/A N/A 49.234±0.00 17.822±0.00 N/A N/A N/A 36.980±0.00 N/A N/A 68.785±23.84 114.116±59.17 5.188±0.00
ENSMUST00000102525 68.350±12.73 44.429±16.11 80.701±13.32 61.988±35.33 34.125±18.18 86.649±19.92 38.009±5.60 51.704±16.86 70.627±34.53 57.796±14.35 30.100±1.92 45.340±10.75 110.123±16.03 13.339±5.46
ENSMUST00000111713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.930±0.00 N/A N/A
ENSMUST00000148913 N/A 49.503±8.92 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768
CIL_0004MV CIL_0004MV_0002 CGP 5:122371876-122406179

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005885 TAS Arp2/3 protein complex
GO:0005925 IEA focal adhesion
GO:0016020 IEA membrane
GO:0030027 IDA lamellipodium
GO:0034314 IEA Arp2/3 complex-mediated actin nucleation
GO:0051015 IEA actin filament binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057882 arpc3 actin related protein 2/3 complex, subunit 3 protein_coding Danio_rerio
ENSG00000111229 ARPC3 actin related protein 2/3 complex, subunit 3, 21kDa protein_coding Homo_sapiens

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