C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031539 Snx8-201 ENSMUSG00000029560 10090 - 5:140340304-140389251 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031539
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031539 10.174±0.59 6.439±0.79 8.189±0.61 7.945±2.56 10.592±2.85 4.421±0.17 3.543±0.76 30.337±5.23 5.756±1.20 8.923±0.51 3.038±0.74 10.325±2.50 14.956±8.17 1.697±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ZO CIL_0000ZO_0002 CGP 5:140331860-140389251
CIL_0000ZL CIL_0000ZL_0002 CGP 5:140340304-140443358

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005768 IBA endosome
GO:0006886 ISS intracellular protein transport
GO:0030904 ISS retromer complex
GO:0031901 ISS early endosome membrane
GO:0034498 ISS early endosome to Golgi transport
GO:0035091 ISS phosphatidylinositol binding
GO:0042802 IEA identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222990 SNX8-001 protein_coding Homo_sapiens 0 1441
ENST00000435060 SNX8-004 protein_coding Homo_sapiens 0 654
ENST00000435336 SNX8-002 protein_coding Homo_sapiens 0 580
ENST00000447136 SNX8-003 protein_coding Homo_sapiens 0 346
ENST00000457286 SNX8-006 protein_coding Homo_sapiens 0 628
ENST00000479689 SNX8-008 retained_intron Homo_sapiens 0 462
ENST00000480807 SNX8-009 retained_intron Homo_sapiens 0 462
ENST00000494722 SNX8-007 retained_intron Homo_sapiens 0 427

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