C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031591 Lhx5-001 ENSMUSG00000029595 10090 + 5:120431770-120441223 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031591
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031591 0.024±0.01 0.019±0.01 0.009±0.01 5.485±4.28 0.058±0.05 0.013±0.00 0.017±0.00 0.018±0.01 0.022±0.02 0.016±0.01 0.024±0.00 0.071±0.04 0.036±0.02 0.113±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000875 CIL_000875_0002 VISTA 5:119835778-120436934
CIL_0008LK CIL_0008LK_0002 VISTA 5:119835887-120436924
CIL_000842 CIL_000842_0002 VISTA 5:119987382-120588927

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007267 IGI cell-cell signaling
GO:0008270 IEA zinc ion binding
GO:0021527 IGI spinal cord association neuron differentiation
GO:0021549 IGI cerebellum development
GO:0021702 IGI cerebellar Purkinje cell differentiation
GO:0021766 IMP hippocampus development
GO:0021846 IMP cell proliferation in forebrain
GO:0021879 IMP forebrain neuron differentiation
GO:0021937 IGI cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation
GO:0042127 IMP regulation of cell proliferation
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IGI positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261731 LHX5-001 protein_coding Homo_sapiens 0 2017
ENST00000557836 LHX5-002 processed_transcript Homo_sapiens 0 422

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